Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre11g0504 | ATGGATGAAAATGGTGGGATAAAGTTGAGTGGAATCCGGCAGATTGTGAGGCTGAAAGAGACTCTCCAACATTGGCAAGGCGTCACAGTTTGCCCCAAATCCAAAGCAGCAGCAGCCCATGAAAATGGAGGCCAAAATCAAAATCATAATCATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACAAATGTGTTGTGTTGTGATTCGGATGAGGAGAGCTGCCAGAGCCCTGAGCATCCACCCGATGTCCCCAAAGGGTATTTGGCTGTTTATGTTGGGCCGGAGCTTCGGAGGTTTATCATTCCCACCAGCTATCTTAGTCATTCCGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTTTGGATTCGATCATACCGGCGGGCTCACTTTCCCATGCGAGATCGAAACATTCAAATACCTTCTCAAGTGCATGGAGAGCCAGCAGAAGGATCATCCTGATGACCACACCCCAGCTGAGAGTTCATTGACTATGGAAGGATAA | 510 | 48.24 | MDENGGIKLSGIRQIVRLKETLQHWQGVTVCPKSKAAAAHENGGQNQNHNHGILSPAINKRLTNVLCCDSDEESCQSPEHPPDVPKGYLAVYVGPELRRFIIPTSYLSHSVFKVLLEKAEEEFGFDHTGGLTFPCEIETFKYLLKCMESQQKDHPDDHTPAESSLTMEG | 169 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 1898853 | 1900022 | - | CrPI670011_11g005040.1 | Cre11g0504 | 512249 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre11g0504 | 169 | Pfam | Auxin responsive protein | 57 | 146 | IPR003676 | GO:0009733(InterPro) | |
| Cre11g0504 | 169 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 20 | 147 | IPR003676 | GO:0009733(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre03g0584 | Cre-Chr3:4596100 | Cre11g0504 | Cre-Chr11:1898853 | 1.10E-10 | dispersed | |
| Cre05g2797 | Cre-Chr5:38697282 | Cre11g0504 | Cre-Chr11:1898853 | 2.90E-18 | dispersed | |
| Cre08g0713 | Cre-Chr8:20143306 | Cre11g0504 | Cre-Chr11:1898853 | 2.80E-14 | dispersed | |
| Cre08g1390 | Cre-Chr8:26893730 | Cre11g0504 | Cre-Chr11:1898853 | 3.00E-16 | dispersed | |
| Cre10g2001 | Cre-Chr10:34696437 | Cre11g0504 | Cre-Chr11:1898853 | 2.00E-13 | dispersed | |
| Cre11g0504 | Cre-Chr11:1898853 | Cre11g0866 | Cre-Chr11:5762988 | 6.70E-15 | dispersed | |
| Cre11g0504 | Cre-Chr11:1898853 | Cre04g1107 | Cre-Chr4:29729947 | 3.20E-17 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre11g0504 | K14488 | - | csv:101207913 | 314.694 |