Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0510 ATGGATCTGACTACTCAAGATCCTCCTATCCCCATCCCTATTCCCATCCCCTTAAATAGTCGTTACGGCGGCCACGACCATGACCATATCATCCACCACCACCATGACCCCTCTGCCACCCGCAACCACATCATCGCGGCCACCATCAATGGTGGAAGCCCACTTCCAACCTCTCAAATGGAAGTTGACCTTCACCACCATAACAACAATAACAATAACAACAACAACAAGAAGCATATCAAATACAAAGAATGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCTACGGATGGCTGCGGTGAGTTTATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACATGCTCGGCCTGCAACTGTCATAGAAACTTCCATCGAAAAGAGATCGAAGGAGAATCCTACGATTGGCTTCACCCCTCTCGCCTCGGGCGGAAGCTTCTCGTCGGTGGAAAGAACATGATCGCCCCACCAGAGGCTGCCGCATTCGCATACCCAACCCCTACTGGGGCGGCGTTCATATCATCAAGAGCAGCAACAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGTGGGGGCGGCGGGCACTCGGAGTCGGAGGAGCAGGAGGAGGCGACAGGGGCAGGGGTCGGGGGAAGGGTGTATTCAGGGCCGATGATGAACAAGAAGCGATTCCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCATAATCTTGCCAAGAAGGATATAATTTCCCCTTCCCATTCTCCTAATCCCTTAAATTAA 909 50.83 MDLTTQDPPIPIPIPIPLNSRYGGHDHDHIIHHHHDPSATRNHIIAATINGGSPLPTSQMEVDLHHHNNNNNNNNNKKHIKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGESYDWLHPSRLGRKLLVGGKNMIAPPEAAAFAYPTPTGAAFISSRAATAQPHHMIMSYNMLGGGGGHSESEEQEEATGAGVGGRVYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDIISPSHSPNPLN 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1998875 1999783 + CrPI670011_11g005100.1 Cre11g0510 512255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0510 302 Pfam ZF-HD protein dimerisation region 80 132 IPR006456 -
Cre11g0510 302 Gene3D - 217 289 - -
Cre11g0510 302 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 81 132 IPR006456 -
Cre11g0510 302 FunFam Zinc-finger homeodomain protein 2 217 288 - -
Cre11g0510 302 MobiDBLite consensus disorder prediction 198 218 - -
Cre11g0510 302 NCBIfam homeobox domain, ZF-HD class 227 283 IPR006455 -
Cre11g0510 302 SUPERFAMILY Homeodomain-like 220 288 IPR009057 -
Cre11g0510 302 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 82 131 IPR006456 -
Cre11g0510 302 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 63 285 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1467 Cre-Chr4:33463153 Cre11g0510 Cre-Chr11:1998875 5.70E-47 dispersed
Cre05g2599 Cre-Chr5:37098373 Cre11g0510 Cre-Chr11:1998875 9.90E-32 dispersed
Cre10g1029 Cre-Chr10:19926116 Cre11g0510 Cre-Chr11:1998875 2.80E-36 dispersed
Cre10g1638 Cre-Chr10:30525597 Cre11g0510 Cre-Chr11:1998875 3.50E-35 dispersed
Cre11g0510 Cre-Chr11:1998875 Cre08g1446 Cre-Chr8:27390283 2.70E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54631 PF04770 ZF-HD_dimer 4.60E-29 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0510 - - - 0.0