Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0510 ATGGATCTGACTACTCAAGATCCTCCTATCCCCATCCCTATTCCCATCCCCTTAAATAGTCGTTACGGCGGCCACGACCATGACCATATCATCCACCACCACCATGACCCCTCTGCCACCCGCAACCACATCATCGCGGCCACCATCAATGGTGGAAGCCCACTTCCAACCTCTCAAATGGAAGTTGACCTTCACCACCATAACAACAATAACAATAACAACAACAACAAGAAGCATATCAAATACAAAGAATGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCTACGGATGGCTGCGGTGAGTTTATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACATGCTCGGCCTGCAACTGTCATAGAAACTTCCATCGAAAAGAGATCGAAGGAGAATCCTACGATTGGCTTCACCCCTCTCGCCTCGGGCGGAAGCTTCTCGTCGGTGGAAAGAACATGATCGCCCCACCAGAGGCTGCCGCATTCGCATACCCAACCCCTACTGGGGCGGCGTTCATATCATCAAGAGCAGCAACAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGTGGGGGCGGCGGGCACTCGGAGTCGGAGGAGCAGGAGGAGGCGACAGGGGCAGGGGTCGGGGGAAGGGTGTATTCAGGGCCGATGATGAACAAGAAGCGATTCCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCATAATCTTGCCAAGAAGGATATAATTTCCCCTTCCCATTCTCCTAATCCCTTAAATTAA 909 50.83 MDLTTQDPPIPIPIPIPLNSRYGGHDHDHIIHHHHDPSATRNHIIAATINGGSPLPTSQMEVDLHHHNNNNNNNNNKKHIKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGESYDWLHPSRLGRKLLVGGKNMIAPPEAAAFAYPTPTGAAFISSRAATAQPHHMIMSYNMLGGGGGHSESEEQEEATGAGVGGRVYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDIISPSHSPNPLN 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1998875 1999783 + CrPI670011_11g005100.1 Cre11g0510 512255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0510 302 Pfam ZF-HD protein dimerisation region 80 132 IPR006456 -
Cre11g0510 302 Gene3D - 217 289 - -
Cre11g0510 302 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 81 132 IPR006456 -
Cre11g0510 302 FunFam Zinc-finger homeodomain protein 2 217 288 - -
Cre11g0510 302 MobiDBLite consensus disorder prediction 198 218 - -
Cre11g0510 302 NCBIfam homeobox domain, ZF-HD class 227 283 IPR006455 -
Cre11g0510 302 SUPERFAMILY Homeodomain-like 220 288 IPR009057 -
Cre11g0510 302 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 82 131 IPR006456 -
Cre11g0510 302 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 63 285 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0510 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1467 Cre-Chr4:33463153 Cre11g0510 Cre-Chr11:1998875 5.70E-47 dispersed
Cre05g2599 Cre-Chr5:37098373 Cre11g0510 Cre-Chr11:1998875 9.90E-32 dispersed
Cre10g1029 Cre-Chr10:19926116 Cre11g0510 Cre-Chr11:1998875 2.80E-36 dispersed
Cre10g1638 Cre-Chr10:30525597 Cre11g0510 Cre-Chr11:1998875 3.50E-35 dispersed
Cre11g0510 Cre-Chr11:1998875 Cre08g1446 Cre-Chr8:27390283 2.70E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1234 . Blo03g00280 Bda06g00184 . . . . . . . . . . . . . . . . . . . . . Cla11g00012 Cam11g0009 Cec11g0010 Cco11g0011 Clacu11g0158 Cmu11g0008 Cre11g0510 . . . . . . . . . . . . . . . Bma12g00035 . . . . . . . Cpe01g01712 . . . . . . . . . . . . . . . . . . Cme10g01673
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1088 . 52 248 ZF-HD Transcription Factor Family AT5G65410 50.5 1.6e-45 180.3
Cre08g1088 . 22 244 ZF-HD Transcription Factor Family AT4G24660 50.9 3.0e-50 195.7
Cre11g0510 . 80 289 ZF-HD Transcription Factor Family AT2G02540 52.8 1.3e-51 200.7
Cre11g0510 . 77 289 ZF-HD Transcription Factor Family AT1G14440 54.6 4.2e-55 212.2
Cre04g1570 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.4e-50 195.7
Cre10g1638 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.2e-51 199.1
Cre01g0634 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.2e-50 197.2
Cre10g1638 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cre01g0634 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 3.1e-58 222.6
Cre01g0634 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 3.0e-51 199.5
Cre10g1638 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.4e-48 189.9
Cre01g0634 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.5e-47 186.8
Cre11g0510 . 80 289 ZF-HD Transcription Factor Family AT2G02540 52.8 1.3e-51 200.7
Cre08g1088 . 22 244 ZF-HD Transcription Factor Family AT4G24660 50.9 3.0e-50 195.7
Cre01g0634 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 3.0e-51 199.5
Cre10g1638 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.4e-48 189.9
Cre04g1570 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.4e-50 195.7
Cre08g1088 . 52 248 ZF-HD Transcription Factor Family AT5G65410 50.5 1.6e-45 180.3
Cre01g0634 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.5e-47 186.8
Cre10g1638 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.2e-51 199.1
Cre01g0634 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.2e-50 197.2
Cre11g0510 . 77 289 ZF-HD Transcription Factor Family AT1G14440 54.6 4.2e-55 212.2
Cre10g1638 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cre01g0634 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 3.1e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54631 PF04770 ZF-HD_dimer 4.60E-29 No_clan Cre TF