Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre11g0517 | ATGGTGTTCCAAGATTTCGACCAAATCTCTGAACGCCGACGCGCCGAGAGGGCACGTAAGTTTCGAAAACGAGTCACCATCGCTGTGGTCTCGGCCTCTGTGATCCTCCTCGTCGTTGCTGCCGCTGTGTTCGTCCAGGTCTCCTCCTCCTCCAAGTCCACCACCAAAAATGGCGATAGCAAGAGTAGTGGCAACTCTAAACAACCCGTGCCACCCGACACGAAACAAGTGTCGCGCATCGAGAAAATGATTACCATGATATGCAACTCGACAGACTACAAAGGCAAATGCGAGAGCACTCTAAAGGATGGCGTCCACACGGATCCTGATTCCTCGGACCCGAAAGACCTCATCAAGCTGGCAATCTCGGCTGCGGCGGATGAGGTCAAATCTGCAGTGAAAAAGGCGTCGGGGTTCAACTTCGCGACGCCGGAGGAAAAGGGGGCGTTCGAGGACTGCAAGGTGCTGTTGGAAGACGGTGTGGAGGAATTGGAGATGTCTATGAGCGAAGTGAGCAAGAAGAATATGGGAAAGCTGACGGCGAAAACGACGCCGGATCTGAATAACTGGCTAAGTGCGGTGATGTCGTATCATGAAACTTGTGTTGATGGGTTCCCAGAGGGGAAGATGAAGACCGAAATGGAGAAGGCAGTGAAGGCTGGAAAGGAACTCACCAGTAATTCCTTGGCGATGATATCGCAGGTGGCTTCCTTCTTCTCCACGTTCGAGATGCCTGAGGGTGCTGCAACACGACGTCGTCTCATGGCCAACGATGGGGTGCCAACTTGGATGAATAGCAATGAGCGAAGGATGTTGAAGGGCGCTTCTGCTGGGGTTAAGCCCAAGCCTAACGTTGTGGTCGCCAAAGATGGGTCTGGAGATTTCAAAACTATTAATGAAGCCTTGGCCAAGATGCCTGCCAAATATGATGGACGGTATGTGATCTATGTGAAGGAAGGAATCTACGAAGAGACGGTGGTGATTACGAAAAAGATGGCGAATGTTACAATGTACGGAGATGGTTCTCAAAAGAGCATGATAAGTGGGAGCAAGAACTTTGTGGATGGAGTCAGAACCTTCCAAACCGCAACATTTGTGGCACTTGGAGAGGGCTTCTTGGGGCAAGGCATGGGATTCAGAAACACAGCGGGTCCTGAAAAGCACCAAGCCGTAGCAGCGAGAGTCCAAGCAGACCGAGCCATATTTGTGAACTGCCGGTTCGAGGGGTACCAGGACACGTTATACGCCCAAGCCCATCGCCAGTTCTACAGAAGCTGTCTGATAACAGGCACCATCGACTTCATCTTCGGTGACGCCGCTGCCATTTTCCAAAACTGCAACATGATGCTCCGAAAGCCCTTAGACAACCAACAGAACATAGTCACAGCACAGGGCAGGACTGACAAGCATGAAACCACAGGCATAGTCCTCCAAAACTGCAAAATTTTGCCCGACAAGACGTTGGAGCCTGTGAAGTCCCAATTCAAAAGCTACTTGGGGAGGCCTTGGAAAGAGTTCTCTAGAACCATTGTAATGGAGTCCACCATTGAAGATATCATTCATCCCGATGGCTGGATGCCTTGGGAAGGAGATTTTGCACTCAAAACCTTGTACTATGCTGAATTTAACAACCAAGGCCCTGGGGCTAAGACCGATGCCAGGGTCAAATGGCCCGGCTACAAGGTGATTGATAAGGAGGAGGCTGCAAAGTTTACCATAGGAACTTTTCTAGAGCTGGATTGGATCGAGAGCTCCTCCGCTCCTGTTCATGTCGGCCTATTTTGA | 1785 | 50.81 | MVFQDFDQISERRRAERARKFRKRVTIAVVSASVILLVVAAAVFVQVSSSSKSTTKNGDSKSSGNSKQPVPPDTKQVSRIEKMITMICNSTDYKGKCESTLKDGVHTDPDSSDPKDLIKLAISAAADEVKSAVKKASGFNFATPEEKGAFEDCKVLLEDGVEELEMSMSEVSKKNMGKLTAKTTPDLNNWLSAVMSYHETCVDGFPEGKMKTEMEKAVKAGKELTSNSLAMISQVASFFSTFEMPEGAATRRRLMANDGVPTWMNSNERRMLKGASAGVKPKPNVVVAKDGSGDFKTINEALAKMPAKYDGRYVIYVKEGIYEETVVITKKMANVTMYGDGSQKSMISGSKNFVDGVRTFQTATFVALGEGFLGQGMGFRNTAGPEKHQAVAARVQADRAIFVNCRFEGYQDTLYAQAHRQFYRSCLITGTIDFIFGDAAAIFQNCNMMLRKPLDNQQNIVTAQGRTDKHETTGIVLQNCKILPDKTLEPVKSQFKSYLGRPWKEFSRTIVMESTIEDIIHPDGWMPWEGDFALKTLYYAEFNNQGPGAKTDARVKWPGYKVIDKEEAAKFTIGTFLELDWIESSSAPVHVGLF | 594 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 2126606 | 2128652 | + | CrPI670011_11g005170.1 | Cre11g0517 | 512262 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre11g0517 | 594 | SMART | PMEI_2 | 79 | 231 | IPR006501 | GO:0004857(InterPro) | |
| Cre11g0517 | 594 | CDD | PMEI-like_3 | 87 | 237 | - | - | |
| Cre11g0517 | 594 | ProSitePatterns | Pectinesterase signature 2. | 428 | 437 | IPR033131 | - | |
| Cre11g0517 | 594 | Pfam | Plant invertase/pectin methylesterase inhibitor | 83 | 231 | IPR006501 | GO:0004857(InterPro) | |
| Cre11g0517 | 594 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 82 | 235 | IPR035513 | - | |
| Cre11g0517 | 594 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 80 | 236 | IPR035513 | - | |
| Cre11g0517 | 594 | FunFam | Pectinesterase | 278 | 593 | - | - | |
| Cre11g0517 | 594 | PANTHER | PECTINESTERASE | 26 | 584 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Cre11g0517 | 594 | SUPERFAMILY | Pectin lyase-like | 280 | 578 | IPR011050 | - | |
| Cre11g0517 | 594 | MobiDBLite | consensus disorder prediction | 51 | 73 | - | - | |
| Cre11g0517 | 594 | NCBIfam | pectinesterase inhibitor domain | 81 | 235 | IPR006501 | GO:0004857(InterPro) | |
| Cre11g0517 | 594 | MobiDBLite | consensus disorder prediction | 51 | 76 | - | - | |
| Cre11g0517 | 594 | Pfam | Pectinesterase | 284 | 578 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Cre11g0517 | 594 | Gene3D | - | 278 | 593 | IPR012334 | - | |
| Cre11g0517 | 594 | FunFam | Pectinesterase | 80 | 236 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre03g0632 | Cre-Chr3:5216749 | Cre11g0517 | Cre-Chr11:2126606 | 9.20E-11 | dispersed | |
| Cre05g0766 | Cre-Chr5:6754181 | Cre11g0517 | Cre-Chr11:2126606 | 1.80E-136 | dispersed | |
| Cre09g1814 | Cre-Chr9:36541866 | Cre11g0517 | Cre-Chr11:2126606 | 1.00E-136 | dispersed | |
| Cre09g1815 | Cre-Chr9:36549001 | Cre11g0517 | Cre-Chr11:2126606 | 3.40E-142 | dispersed | |
| Cre10g0267 | Cre-Chr10:1566735 | Cre11g0517 | Cre-Chr11:2126606 | 6.10E-101 | dispersed | |
| Cre11g0517 | Cre-Chr11:2126606 | Cre11g1871 | Cre-Chr11:30372525 | 4.50E-82 | dispersed | |
| Cre11g0517 | Cre-Chr11:2126606 | Cre06g1255 | Cre-Chr6:6464256 | 2.90E-137 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre11g0517 | - | - | - | 0.0 |