Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0526 ATGTCCTTTTCAGCTGCCTCAAATCTTCCCTCAGGAGGACCCCATTCAGGGCCCTCTTCCGATGCATTGTATAGGGAATTATGGCATGCTTGTGCAGGACCACTTGTCACCCTTCCTCGCCAAGATGAACGAGTATACTACTTTCCTCAGGGTCACATGGAACAGCTGGAAGCCTCAATGCATCAAGGTTTGGAGCAACAAATGCCTTCATTCAACCTTCCATCAAAAATACTTTGTAAAGTTGTCAATGTTGTTCTTCGGGCGGAACCCGACACCGATGAAGTTTATGCTCAGATAACTCTATTACCAGAAAGCAATCAAAGTGAAGTAACGAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTTCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTTTCTGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTCTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTCGCGACTGATTTACATGGGAGTCAATGGCATTTTAGGCACATTTTTCGAGGTCAACCAAGGCGTCATTTGCTAACAACTGGGTGGAGCGTCTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAACTAAACAATATGCCATCTTCTGTTATATCAAGTCACAGTATGCATCTTGGAGTTTTAGCCACTGCTTCTCATGCTATTGCAACTGGGACACTCTTTTCTGTCTTTTACAAGCCAAGGACAAGCAGGTCTACGTTTCTTGTAAGTCTGAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTACCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCGTCACCTGGGTGGGCGAATTCTGAGTGGCGATCGTTAAAGGTGCAATGGGATGAACCTTCATCTATCTTGCGTCCAGATAAGGTGTCTGCTTGGGAATTGGAGCCACTTGTTGCTTCTAACCCTCTAAGCACTCAGCCTACACAGAGGAACAAGCGTCCACGGCCTACTGTTTTGCCTTCATCTTCGCCAGATGCAACTGTACTTGGTGGGTGGAAACCTACGGTTGAATCTTCTGCTTTCTCATATACTGAGCCACAGCGCGGAAGGGACCTATATTCATCACCGAAGTTCAGTACTGCTGCTTCAAATTCACTTGGTTTTAATGCAAATGGTTCTCTTGGTGCTGTGTCCAGCAACACCTACTGGTCTAATACGAATAGGGTGGAAAATATTATGGACACTTCATCTCATGGAGCAAACAGGGAACCCATTGAAAAGAAGCAGAACACTAGAAACGGATGCAGGCTCTTTGGGATACAGCTTCTTGGAAATTCTAATGTAGACGAAGCTTCTCCTGTTTCAACGCCTAAAATGGTCGGTGAGGATAGGCTGGTTCCACCTGTAGACTCAGAATTTGACCAGCATTCTGAACCATCAAACATTCCCCGATCAGATATTCCTTCAGTAAGCTGTGATGCTGATAAATCGTGCCTGATCTCCCCATTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCACATGCAAGGAATTGCTGTTGGGAGGGCTGTTGATTTAACCCGGTTCAATCAATATGATGATCTACTCAGGAAACTGGAGGAGATGTTTGACATAGAGGGTGAGCTTTGTGGCTCTTTAAAGAAATGGCAGGTTGTTTACACCGATGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAACGAGTTCTGCAGCATGGTAAGGAAGATATTCATTTACACAACAGAAGAAGTGAAGAGACTCTCGCCCAAGATAAAACTCCCACTGGGTGGAGATGGAAAGCTTTGCAAGCCAGATTCCGATACAATTGCCAACCACACGGAGGATCAATCGTCCATTGTGGGATCAGATTGCTGA 2037 45.36 MSFSAASNLPSGGPHSGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVVLRAEPDTDEVYAQITLLPESNQSEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGSQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLKVQWDEPSSILRPDKVSAWELEPLVASNPLSTQPTQRNKRPRPTVLPSSSPDATVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTAASNSLGFNANGSLGAVSSNTYWSNTNRVENIMDTSSHGANREPIEKKQNTRNGCRLFGIQLLGNSNVDEASPVSTPKMVGEDRLVPPVDSEFDQHSEPSNIPRSDIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSLKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGDGKLCKPDSDTIANHTEDQSSIVGSDC 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2250320 2259386 - CrPI670011_11g005260.1 Cre11g0526 512271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0526 678 CDD B3_DNA 126 228 IPR003340 GO:0003677(InterPro)
Cre11g0526 678 MobiDBLite consensus disorder prediction 362 386 - -
Cre11g0526 678 FunFam Auxin response factor 548 642 - -
Cre11g0526 678 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Cre11g0526 678 FunFam Auxin response factor 126 230 - -
Cre11g0526 678 Gene3D - 548 642 - -
Cre11g0526 678 Pfam AUX/IAA family 552 644 IPR033389 -
Cre11g0526 678 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677(InterPro)
Cre11g0526 678 Gene3D - 125 230 IPR015300 -
Cre11g0526 678 Gene3D - 291 364 - -
Cre11g0526 678 FunFam Auxin response factor 291 363 - -
Cre11g0526 678 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
Cre11g0526 678 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
Cre11g0526 678 Pfam Auxin response factor 254 336 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre11g0526 678 SUPERFAMILY CAD & PB1 domains 555 630 - -
Cre11g0526 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 643 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre11g0526 678 ProSiteProfiles PB1 domain profile. 553 646 IPR053793 -
Cre11g0526 678 MobiDBLite consensus disorder prediction 362 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2093 Cre-Chr4:38145730 Cre11g0526 Cre-Chr11:2250320 1.40E-13 dispersed
Cre06g2687 Cre-Chr6:34327108 Cre11g0526 Cre-Chr11:2250320 6.90E-177 dispersed
Cre09g2333 Cre-Chr9:42605333 Cre11g0526 Cre-Chr11:2250320 4.10E-176 dispersed
Cre11g0526 Cre-Chr11:2250320 Cre11g1577 Cre-Chr11:25551383 3.40E-17 dispersed
Cre11g0526 Cre-Chr11:2250320 Cre09g0908 Cre-Chr9:9117104 4.50E-179 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54632 PF02309 AUX_IAA 1.60E-11 CL0072 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0526 K14486 - csv:101204612 1320.45