Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre11g0545 | ATGGAGGGAGGACAAGACGATGCCGGAAATGGGTTCACGGCGGCCGCTGGATCAAATCATCCGAGACCCGAGGCGGCAGCTCCACCACCGGAAGGTGGTGGTCCGGTGGGTTCTTCAGCGGCGGCAGGAAAGAAGAAGAGGGGGAGGCCGAGGAAGTATGGGCCGGACGGGAAGTTGAATGTGGCGGCACTGTCGCCGAAGCCGATATCGGCGTCGGCACCGGCACCGGCGGCAGTTATTGATTTCTCGGCGGAGAAACGTGGAAAAGTGCGGCCGGCGACTTCCTTGACCAAAACCAAATATGAAGTGGAGAATTTAGGTGAATGGGTACCTTGTTCTGTTGGTGCTAATTTCACACCCCATATCATCACAGTAAGCACTGGCGAGGACGTTACGATGAAGGTTCTCTCATTTTCTCAACAAGGGCCTCGAGCAATCTGCATTCTCTCCGCTAACGGCGTGATTTCGAGCGTCACGCTCCGTCAACCCGACTCCTCTGGAGGAACATTAACATATGAGGGTCGTTTTGAGATATTGTCATTGTCGGGATCATTCATGCCGAGCGACAACGCAGGAACAAAGAGCAGAATTGGTGGAATGAGTGTCTCCTTAGCAAGTCCAGATGGACGAGTTGTTGGTGGTGGAGTTGCCGGTTTGTTAATAGCTGCAAGTCCAGTTCAAGTGGTTGTAGGAAGCTTTTTATCTGGAAACCAACATGAGCAAAAGTCGAAAAAATCAAAACCCGACGTCGTATTACCAGTTTCTGCTTTTCCAATCTCTAGTGTGGAACCGAAATCATACAAGACGACGACGACGACAACGACGACGACATCTTCGTTTCGTGCTGAAACATGGTCACCTTTAGTTCCAGATTTAAGAAGCCAGCCAACTGATATCAATGTATCATTAACAAGTGGTTAA | 921 | 50.6 | MEGGQDDAGNGFTAAAGSNHPRPEAAAPPPEGGGPVGSSAAAGKKKRGRPRKYGPDGKLNVAALSPKPISASAPAPAAVIDFSAEKRGKVRPATSLTKTKYEVENLGEWVPCSVGANFTPHIITVSTGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNAGTKSRIGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLSGNQHEQKSKKSKPDVVLPVSAFPISSVEPKSYKTTTTTTTTTSSFRAETWSPLVPDLRSQPTDINVSLTSG | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 2433570 | 2436181 | - | CrPI670011_11g005450.1 | Cre11g0545 | 512290 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre11g0545 | 306 | ProSiteProfiles | PPC domain profile profile. | 115 | 260 | IPR005175 | - | |
| Cre11g0545 | 306 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 117 | 240 | - | - | |
| Cre11g0545 | 306 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 120 | 233 | IPR005175 | - | |
| Cre11g0545 | 306 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
| Cre11g0545 | 306 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 16 | 269 | IPR039605 | GO:0003680(InterPro) | |
| Cre11g0545 | 306 | FunFam | AT-hook motif nuclear-localized protein 1-like | 120 | 250 | - | - | |
| Cre11g0545 | 306 | CDD | DUF296 | 119 | 233 | IPR005175 | - | |
| Cre11g0545 | 306 | Gene3D | - | 120 | 251 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre04g1066 | Cre-Chr4:29320749 | Cre11g0545 | Cre-Chr11:2433570 | 2.60E-15 | dispersed | |
| Cre05g0305 | Cre-Chr5:2836686 | Cre11g0545 | Cre-Chr11:2433570 | 1.60E-76 | dispersed | |
| Cre11g0545 | Cre-Chr11:2433570 | Cre11g2294 | Cre-Chr11:34578089 | 2.20E-48 | dispersed | |
| Cre11g0545 | Cre-Chr11:2433570 | Cre09g2170 | Cre-Chr9:40734516 | 1.10E-103 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre11g0545 | - | - | - | 0.0 |