Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0556 ATGTTCGCTTTGGGAAATTCAGCATCGAGCTACAAAACCCTACTCCACTTCCCAACTTCATCGCCTCCCACTGCCTCTCGTGCTTCTGCCACTACGCTACCCCTCCCAGATCTGAAACCAGACCGTGGAGCATTTCTCCCTTCAGCCATGGCACTGGTCTTACACGCAGGAAAGACAAATAAAAATTCTTTCAAGGCTCTCATTGCTGCAGAATACAATGGAGTCGAAGCGAAATTGGTCCCAGACTTTGAGATGGGAGTCTCAAACAAGACTCCGGAGTTTATCAAGATGAACCCTATTGGGAAGGTCCCTGTATTAGAAACGCCCGATGGCCCCATATTCGAGAGTAACGCTATAGCCCGTTATGTTTCTCGCTTGAAGGCTGATAGTCCTCTCTATGGTTCATCTCTGATAGATTATGGACATATTGAACAATGGATTGATTTTGCAACATTGGAGATAGATTCTAATATTTTGACTTGGTTTAGACCTAGAATGGGGAGAGCTGTTTATCTTCCTCCTGTCGAGGAAGCTGCAATTGCTGCATTGAAGAGAGCTTTGGGAGCTTTGAATACACACCTGGCTTCAAATACATACCTAGTTGGTCATTCTGTTACATTAGCTGACATAATCTTGACTTGCAACCTGTTCTTGGGTTTTACTAAGCTCATGACTAAGAGCTTTTCCTCGGAGTTCCCACATGTTGAGCGGTACTTCTGGACCTTGGTCAATCAGCCAAACTTCAAAAAAATCTTGGGTGAGGTGAAGCAGGCAGAGTCAGTTCTTCCTGTTCAATCTGTAAAGAAACCTGATGAATCTTCTAAGCAAAAGCACACGGATGAGAGTAAGAAAGAACCTAAAAAGGAAGCTGAAAAAGAGAAGCCAAAGGCTGTAGCTGGTGAGGGAGAGGATGAGGCACCAAAGCCAAAACCAAAAAATCCTCTTGATTTGCTACCTCCCAGTAAGATGATTCTGGATGAGTGGAAGCGGCTATACTCGAATACCAAAACCAACTTTCGGGAGGTTGCAATTAAAGGATTTTGGGACATGTACGATCCAGAGGGATATTCTCTTTGGTTCTGTGAATACAAGTACAACGATGAGAATACTGTTTCATTCGTGACTTTGAACAAGGTTGGTGGCTTCCTCCAGCGAATGGATCTCGCTCGTAAGTATGCTTTTGGGAAGATGTTAGTGATTGGATCAGAACCTCCATTTAAGGTGAAGGGTCTATGGCTTTTCCGTGGACAAGAGATACCCAAATTCGTCTTGGACGAGTGCTACGACATGGAACTTTATGAATGGAGGAAGGTTGATATATCAGATGAGGCACAAAAGGAACGCGTAAACCAGATGATTGAAGATCAGGAGCCTTTTGAAGGGGAGGCTTTGTTGGATGCCAAATGCTTCAAGTGA 1416 44.21 MFALGNSASSYKTLLHFPTSSPPTASRASATTLPLPDLKPDRGAFLPSAMALVLHAGKTNKNSFKALIAAEYNGVEAKLVPDFEMGVSNKTPEFIKMNPIGKVPVLETPDGPIFESNAIARYVSRLKADSPLYGSSLIDYGHIEQWIDFATLEIDSNILTWFRPRMGRAVYLPPVEEAAIAALKRALGALNTHLASNTYLVGHSVTLADIILTCNLFLGFTKLMTKSFSSEFPHVERYFWTLVNQPNFKKILGEVKQAESVLPVQSVKKPDESSKQKHTDESKKEPKKEAEKEKPKAVAGEGEDEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCEYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVLDECYDMELYEWRKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFK 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2587283 2589962 - CrPI670011_11g005560.1 Cre11g0556 512301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0556 471 SUPERFAMILY GST C-terminal domain-like 131 263 IPR036282 -
Cre11g0556 471 FunFam Elongation factor 1-gamma 1 311 471 - -
Cre11g0556 471 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 136 264 IPR010987 -
Cre11g0556 471 MobiDBLite consensus disorder prediction 263 318 - -
Cre11g0556 471 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 50 471 IPR044628 GO:0004364(InterPro)
Cre11g0556 471 Gene3D Glutaredoxin 49 123 - -
Cre11g0556 471 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 50 131 IPR004045 -
Cre11g0556 471 SFLD Glutathione Transferase (cytosolic) 53 239 IPR040079 -
Cre11g0556 471 FunFam Elongation factor 1 gamma 129 265 - -
Cre11g0556 471 Gene3D - 129 266 - -
Cre11g0556 471 Pfam Glutathione S-transferase, C-terminal domain 175 246 IPR004046 -
Cre11g0556 471 CDD GST_C_EF1Bgamma_like 139 259 - -
Cre11g0556 471 SUPERFAMILY Thioredoxin-like 49 134 IPR036249 -
Cre11g0556 471 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 311 471 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Cre11g0556 471 MobiDBLite consensus disorder prediction 270 311 - -
Cre11g0556 471 FunFam Elongation factor 1B gamma 50 123 - -
Cre11g0556 471 Pfam Elongation factor 1 gamma, conserved domain 310 418 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Cre11g0556 471 Pfam Glutathione S-transferase, N-terminal domain 59 125 IPR004045 -
Cre11g0556 471 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 311 471 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
Cre11g0556 471 CDD GST_N_EF1Bgamma 52 126 - -
Cre11g0556 471 SMART EF1G_2 310 418 IPR001662 GO:0003746(InterPro)|GO:0006414(InterPro)
Cre11g0556 471 SFLD Main (cytGST) 53 239 - -
Cre11g0556 471 SUPERFAMILY eEF1-gamma domain 311 471 IPR036433 GO:0003746(InterPro)|GO:0006414(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0906 Cre-Chr10:10469490 Cre11g0556 Cre-Chr11:2587283 5.90E-182 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0556 K03233 - rcu:8263260 710.294