Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0563 ATGGCAATGCCACAAGTAGTTGTTGTCGTGTTGACGTTTTTGTTTTTGGGTTTAGCATCCAACGCTCAACTTTCCTCCACATTTTATGACCAAACTTGTCCCACTGCACTCACCACGATTAGAACGATTATTAGGCAAGCAATTTCTCGAGAACGTCGAATGGCTGCATCTCTCATTCGCCTCCATTTTCACGATTGCTTCGTTCAAGGTTGTGATGCGTCAATATTGCTTGACGATACTCCTTCTATGATTGGTGAACAAAATGCAGCACCCAATAGAAACTCTGCTAGAGGTTACGGGGTGATTCATAAGGCTAAGACTGAAGTTGAGAAGAAATGTCCCGGTGTTGTATCTTGTGCCGATATTCTTGCTGTGGCTGCAAGGGATGCTTCTTTTGCTGTTGGTGGTCCATCTTGGAAAGTAAAACTTGGAAGAAGAGACTCTACTACTGCAAGCAAAACTCTAGCAGAGAACGAGCTTCCACATTTCCAAGCAGGTCTTGAAAGGCTTATTTCCATTTTTGCAAATAAAGGTCTTAGTACCAGAGACATGGTTGCACTATCCGGTTCTCATACTATAGGACAAGCCCAATGCTTCCTTTTCCGCAATAGGATATACAACCAAAGTAATATTGACACGGGGTTTGCCAAGACTCGTCGCAGAAATTGTCCAACATCAGGGGGAAATGGCAATTTGGCACCCCTTGATTTGGTCACACCGAATTCCTTTGATAACAACTACTTCAAAAATCTTATTCAAAGAAAGGGCTTGCTAGAAACTGATCAAGTTCTTTTTAATGGAGGATCGACAGATAACATTGTTAGAGAGTATAGTAGAGATCCAACCATATTCAAATCTGACTTTGCAACTGCAATGGTGAAGATGGGAGACATCCAACCTCTAACTGGCTTGGAAGGACAAATAAGAAATATATGTGGTGCTGTAAACTAA 951 41.85 MAMPQVVVVVLTFLFLGLASNAQLSSTFYDQTCPTALTTIRTIIRQAISRERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNRNSARGYGVIHKAKTEVEKKCPGVVSCADILAVAARDASFAVGGPSWKVKLGRRDSTTASKTLAENELPHFQAGLERLISIFANKGLSTRDMVALSGSHTIGQAQCFLFRNRIYNQSNIDTGFAKTRRRNCPTSGGNGNLAPLDLVTPNSFDNNYFKNLIQRKGLLETDQVLFNGGSTDNIVREYSRDPTIFKSDFATAMVKMGDIQPLTGLEGQIRNICGAVN 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2663100 2664243 - CrPI670011_11g005630.1 Cre11g0563 512308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0563 316 Gene3D - 27 312 - -
Cre11g0563 316 ProSiteProfiles Plant heme peroxidase family profile. 23 316 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 FunFam Peroxidase 27 169 - -
Cre11g0563 316 Gene3D Peroxidase, domain 2 161 295 - -
Cre11g0563 316 PANTHER PEROXIDASE 72-RELATED 11 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 Pfam Peroxidase 41 280 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 FunFam Peroxidase 161 295 - -
Cre11g0563 316 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Cre11g0563 316 SUPERFAMILY Heme-dependent peroxidases 23 316 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Cre11g0563 316 PRINTS Plant peroxidase signature 290 303 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0563 316 CDD secretory_peroxidase 23 315 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g2073 Cre-Chr7:36282642 Cre11g0563 Cre-Chr11:2663100 5.00E-70 dispersed
Cre09g2044 Cre-Chr9:39542773 Cre11g0563 Cre-Chr11:2663100 2.00E-66 dispersed
Cre11g0563 Cre-Chr11:2663100 Cre11g0589 Cre-Chr11:2992064 2.70E-158 dispersed
Cre11g0563 Cre-Chr11:2663100 Cre11g0588 Cre-Chr11:2986905 6.90E-146 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0563 K00430 - csv:116403992 567.385