Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre11g0567 | ATGCCCTCCTTTCGTTTGTCGCAATGTCACAACACTACTACTTCAGCGCCTAAGCACTGCATAGACTTCCAAAGCCAAAGCCCTTATTTCCTTTTGCATAGCTTCTCTCCAACCAACACTTTTCATAGCCTCATTAAAATTAAGAGGCTCATGTCCTACAGTTACTACTGCAAGAAATGTAAGATGTCGCATAGAACATTTATCATAGCTCACAAAATTGGCTATAGATTTATTGTTCCAAGTGTCGTTTCGATTGAGCATTTGCCTTCCCCAACCGTAGTGGGTCAAGCCCAAGGAAGAACATTCCGCTCAATCTACATTAACCATCCAAATCACAAGTGTAATACTGGCACTGGATCTGGTAGAAAATGTAAGCCATTTGAATTTTTGTTGGGTGTCCTAACGAGTGTGAATATGATGGAGGAAGATGCCAAAGAACAGCCGAAGGCTACAGAACTTCAGGCAAAGAAAACCCATGTTTCTCAGTTGCCTTGCGACGGTGATGGCATTTGCATGCTCTGCAAGGCCAAGCCTTCTGACTTGGAGACGATAACTTGCAAAACTTGCGTCACCCCTTGGCATGTTAGTTGTCTCTCAAATCCCCCTGAAACCCTTGCATCCACCCTTCAATGGGACTGTCCTGATTGTTCCACCCCTCCCGAAGATGTTCCCCTTCCTTCGCTAGGCAACCATTCACTCCCCACTGCGCCTTCTAGTGACCTTGTTGCTGCGATTCGAGCCATTGAGGCCGATGCCTCCCTTACTGACCGTGAGAAGGCAAAGAAGCGCCAAGAACTTCTCAGCGGAAAGTTGCAATCCGACAAGGATGACAATGATACCAACAAGGAAAAGAAAAAAAAAGGGGATGATGTTTTGGATTTGTTTGACGAGAGATTGAACTGCTCCTTCTGCATGCAGTTACCAGAAAGGCCTGTCACCACCCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAGAACACTTGTGCAAAGTGCCGCTGCGTGATTCCCTCCAAAATGGCTAGCCAGCCCCGTATTAACTCCACCCTTGTAGTGGCCATTCGTATGGCTAAATTGTCAAAATCATTTGCTTCTGGAGGACCTCAGAAGGTTTATCATTTTGTCCACAATCAAAATAGACCAGATAAAGCCTATACCACTGATCGGGCACAAAAAAAAGGAAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCCTGCCGAAAATGATCCTGAGAGAAACCAGGGTGTTCTGGTTGGTGAATGCTGGGAGGATAGGCTAGAATGTCGTCAATGGGGCGCTCACTTTCCACATGTTGCAGGTATAGCGGGACAGTCAAATATTGGTGCACAGTCGGTGGTTCTTTCTGGTGGCTACCAGGATGATGAAGATCATGGGGAGTGGTTTCTCTACACTGGAAGTGGCGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAATCTTTTGACCAGAAATTTGAAAAATCAAACAAAGCGCTACAAGTTAGCTGCGCGAAAGGTTATCCTGTTAGGGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAGAAGGGATTGCGGTATGATGGAGTTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAGGTATGTCGCTATTTATTTGTTAGATGCGACAATGATCCTGCTCCATGGACAAGTGATGAACATGGAGATCGACCTAGACCCTTACCTGCAATTTCAGAGTTGAAAAAAGCCACAGATATTACGGAGAGGAAGGAAGGTCCATCATGGGACTTTGATGAGAAAGACGGTCAATGGAAGTGGAGGAAAGATCCACCAACGAGCAAGAGACCAGTTGAAGCTCTAGATTCTAATGGGAAGAGGTCAAGGATAAGAATTAGGCAATCACATATTATGAGTGTCCGAGAAAAGTTACTGAAAGAGTTTAGCTGCCTTATTTGCCGGGAGGTGATGAATTTACCAATTACTACGCCTTGTGCCCATAACTTTTGCAAGTCATGCTTGGAAGGTGCTTTTGTGGGGAAGACATTCTTGAGAGAGAGAAGCACCGGTGGACGGGCTCTTAGATCCCAAAAGAATGTCTTGACTTGTCCTTGTTGCCCCACAGATATATCTGATTTTCTACAGAATCTTCAGGTAAATAGAGAGTTGTTGGATGTGATCGAGTCATTAAAAAGTAAGATTGAAGAAGGGGATGGAGCATCTGAGAAGCTGTGTGAAGAAGAAGAGGTAGATGGGGAAGAGGAGAATGAGGATGAAGATGAGGATGAAGGGAAGGGAAAAGATGGAAGCAATGCAAATGTAAGCAGCAGTCCTGTGGAAACGAGGAAGCGAGCAAAGTGCATAGAATGCGATTATGAGAACTGGGGACTTCTGATTGAAGTAAAGCTCCGGTTTGGTTCCTTTGAATCTATAAGTGCTGCAGCCTCACCAGTCTTCTCAAACACGATTTCCCTCTCAAGTTCTCAAGCGTCTTTGGCCGTTCAAGTTTTTTTGAGCATTTGA | 2589 | 44.65 | MPSFRLSQCHNTTTSAPKHCIDFQSQSPYFLLHSFSPTNTFHSLIKIKRLMSYSYYCKKCKMSHRTFIIAHKIGYRFIVPSVVSIEHLPSPTVVGQAQGRTFRSIYINHPNHKCNTGTGSGRKCKPFEFLLGVLTSVNMMEEDAKEQPKATELQAKKTHVSQLPCDGDGICMLCKAKPSDLETITCKTCVTPWHVSCLSNPPETLASTLQWDCPDCSTPPEDVPLPSLGNHSLPTAPSSDLVAAIRAIEADASLTDREKAKKRQELLSGKLQSDKDDNDTNKEKKKKGDDVLDLFDERLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASQPRINSTLVVAIRMAKLSKSFASGGPQKVYHFVHNQNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPIPAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNIGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNKALQVSCAKGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPAISELKKATDITERKEGPSWDFDEKDGQWKWRKDPPTSKRPVEALDSNGKRSRIRIRQSHIMSVREKLLKEFSCLICREVMNLPITTPCAHNFCKSCLEGAFVGKTFLRERSTGGRALRSQKNVLTCPCCPTDISDFLQNLQVNRELLDVIESLKSKIEEGDGASEKLCEEEEVDGEEENEDEDEDEGKGKDGSNANVSSSPVETRKRAKCIECDYENWGLLIEVKLRFGSFESISAAASPVFSNTISLSSSQASLAVQVFLSI | 862 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 2722797 | 2732755 | - | CrPI670011_11g005670.1 | Cre11g0567 | 512312 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre11g0567 | 862 | ProSiteProfiles | Zinc finger RING-type profile. | 301 | 340 | IPR001841 | - | |
| Cre11g0567 | 862 | SMART | ring_2 | 672 | 728 | IPR001841 | - | |
| Cre11g0567 | 862 | SMART | ring_2 | 301 | 339 | IPR001841 | - | |
| Cre11g0567 | 862 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 249 | 367 | IPR013083 | - | |
| Cre11g0567 | 862 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED | 158 | 781 | IPR045134 | GO:0010216(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
| Cre11g0567 | 862 | SUPERFAMILY | PUA domain-like | 403 | 598 | IPR015947 | - | |
| Cre11g0567 | 862 | CDD | RING-HC_ORTHRUS_rpt1 | 297 | 344 | IPR047498 | - | |
| Cre11g0567 | 862 | Pfam | RING-type zinc-finger | 672 | 704 | IPR027370 | - | |
| Cre11g0567 | 862 | ProSiteProfiles | Zinc finger RING-type profile. | 672 | 728 | IPR001841 | - | |
| Cre11g0567 | 862 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 400 | 595 | - | - | |
| Cre11g0567 | 862 | ProSiteProfiles | Zinc finger PHD-type profile. | 168 | 219 | IPR019787 | - | |
| Cre11g0567 | 862 | ProSiteProfiles | YDG domain profile. | 429 | 577 | IPR003105 | - | |
| Cre11g0567 | 862 | SUPERFAMILY | FYVE/PHD zinc finger | 163 | 223 | IPR011011 | - | |
| Cre11g0567 | 862 | SUPERFAMILY | RING/U-box | 292 | 347 | - | - | |
| Cre11g0567 | 862 | MobiDBLite | consensus disorder prediction | 763 | 786 | - | - | |
| Cre11g0567 | 862 | MobiDBLite | consensus disorder prediction | 258 | 286 | - | - | |
| Cre11g0567 | 862 | MobiDBLite | consensus disorder prediction | 622 | 644 | - | - | |
| Cre11g0567 | 862 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 651 | 775 | IPR013083 | - | |
| Cre11g0567 | 862 | Pfam | Zinc finger, C3HC4 type (RING finger) | 301 | 339 | IPR018957 | GO:0046872(InterPro) | |
| Cre11g0567 | 862 | Pfam | SAD/SRA domain | 431 | 580 | IPR003105 | - | |
| Cre11g0567 | 862 | MobiDBLite | consensus disorder prediction | 759 | 800 | - | - | |
| Cre11g0567 | 862 | FunFam | E3 ubiquitin-protein ligase ORTHRUS 2 | 247 | 368 | - | - | |
| Cre11g0567 | 862 | SUPERFAMILY | RING/U-box | 665 | 753 | - | - | |
| Cre11g0567 | 862 | Gene3D | - | 400 | 596 | IPR036987 | - | |
| Cre11g0567 | 862 | ProSitePatterns | Zinc finger RING-type signature. | 687 | 696 | IPR017907 | - | |
| Cre11g0567 | 862 | SMART | PHD_3 | 170 | 217 | IPR001965 | - | |
| Cre11g0567 | 862 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 221 | IPR013083 | - | |
| Cre11g0567 | 862 | SMART | G9a_1 | 424 | 581 | IPR003105 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre04g0365 | Cre-Chr4:11230813 | Cre11g0567 | Cre-Chr11:2722797 | 3.10E-303 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre11g0567 | K10638 | - | csv:101219001 | 1215.29 |