Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0573 ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGGCAGATGAGAGGTCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCCACCACCTCCCTCTAATTCTTCCACTGCTCCAAATCCTCAACAACCCCAAAAGAAAAAGAGAAACCAACCAGGAACTCCAAATCCAGATGCGGAAGTGATAGCGTTGAGTCCGAAGACGTTAATGGCAACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAAAATCTACAACTGCATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAAAAGCACAAAAGAGCCAAAAAGAAAAGTGTATTTATGCCCAGAACCCACATGCGTACACCACGACCCATCAAGAGCACTTGGAGATTTAACAGGCATCAAGAAACACTACTCGCGAAAGCACGGCGAGAAGAAATGGAAGTGCGATAAATGCTCTAAACGTTACGCCGTTCAATCCGACTGGAAAGCCCATTCCAAAACCTGTGGCACCAGAGAATATCGTTGCGATTGTGGTACTCTCTTCTCCAGACGGGACAGTTTTATTACCCATAGAGCTTTTTGTGATGCATTGGCTCAAGAAAGTGCAAGACATCCTCCAAATTTAGGGTCTGCCATTGGAAGCCATTTATATGGAGGTAATAGCAATGTGGGTTTGACATTATCACAAGTCCCTCAAATTTCTTCTCTTCAAGACCATCCCAATATCCCCCAATCCCCTCACGACGTCCTCCGCCTCGGTGGCGGCCGAACCGGGCAATTCACTCATCTCCTCCCTCCTTCTATTGGCTCTTCCTTCCGACCCCCGCCACAACAAGCAATGCCGTCGTCGAATGCCGCCACGTTCTTCCTTTCGGACCAAACTAACCAAAATAGCTTCCATGAAGATCATCATCAAAGCCAATCGCAACAAGGGTTGTTTGGAAACAAAGCCTTTCATGGGCTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAGTAACAACAACAACAATTCTGCCTCAAATCTCTTCAATTTAGGCTTCATTTCAAACCCAACTGGTGATAATACTTCCAATATGAACAGTAACAATGACACCAACACTAACAATAGCAGCAGCAGCAACAACAACAACAACAATCTTCCATCCTCTTTGCTAAACCAATTCAATGGAACAAACAATGGCAACAATGACGGTCCTGCATCTAATATTTTCGCCGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTTCCATCTCTCTACAGCACGGCCGCCCCGGGAGGATGTAATAGCGGTACAAGCGGAGGAGCAATCCCACATATGTCGGCGACAGCACTTCTCCAAAAGGCAGCACAATTAGGCTCAACAACGTCGAGTAGCAACACTACAGCAACGTTGCTAAGGACATTTGGGAGCTCCTCAAGCTCAGGCGGGAAGGCGACGGATAGAACACTATTCCCACCGAGCTACGGTGGAGTAGTGTTCGGCGAGAACGAGAGCAATCTCCAGGATTTGATGAACTCGTTCACGACGGGGAGCTCGGGGAGCGGGATGTTCGGGAGCGGGATGAGCTCGTTCGGTGGATTTGAAGGGAGTAATCGAAACAATATGGAAAGTATGGAGGATCCAACGAAGTTACAACAGAATTTAAGCACAGTGAGTGTGGGAGGTGGGGCAGATAGGTTAACAAGAGACTTCTTAGGGGTTGGACAGGTTTTGAGAAGTATGAGCGGTGGCGGCGGTTATTCACAAAGAGAACATAAACAGCCACCGCAAGGGATAGTTTTGGAGGTGAAGAAGAGAAGAAGGAAAACAAGTACAGACAGAAACAGATTTTTCAAATGCAACAAATATCAATGCCTGCCAACTTCAATCAGTGATCCAAAAATATCAGTGGATGGTGGAAGAATTCAAAGCTTTATACATTCTTTACATTAA 1971 45.97 MAASSSSVPLFGVREEGQMRGQQQQQQQQQPPPPPPSNSSTAPNPQQPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGSAIGSHLYGGNSNVGLTLSQVPQISSLQDHPNIPQSPHDVLRLGGGRTGQFTHLLPPSIGSSFRPPPQQAMPSSNAATFFLSDQTNQNSFHEDHHQSQSQQGLFGNKAFHGLMQFPSDIQTHASNNNNNSASNLFNLGFISNPTGDNTSNMNSNNDTNTNNSSSSNNNNNNLPSSLLNQFNGTNNGNNDGPASNIFAVNIMGDQINSAAVPSLYSTAAPGGCNSGTSGGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSSSGGKATDRTLFPPSYGGVVFGENESNLQDLMNSFTTGSSGSGMFGSGMSSFGGFEGSNRNNMESMEDPTKLQQNLSTVSVGGGADRLTRDFLGVGQVLRSMSGGGGYSQREHKQPPQGIVLEVKKRRRKTSTDRNRFFKCNKYQCLPTSISDPKISVDGGRIQSFIHSLH 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2839629 2843879 - CrPI670011_11g005730.1 Cre11g0573 512318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0573 656 FunFam protein indeterminate-domain 5, chloroplastic-like 133 212 - -
Cre11g0573 656 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 116 150 - -
Cre11g0573 656 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 181 216 - -
Cre11g0573 656 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Cre11g0573 656 Gene3D Classic Zinc Finger 58 127 - -
Cre11g0573 656 SMART c2h2final6 120 150 IPR013087 -
Cre11g0573 656 SMART c2h2final6 79 101 IPR013087 -
Cre11g0573 656 SMART c2h2final6 155 175 IPR013087 -
Cre11g0573 656 MobiDBLite consensus disorder prediction 363 406 - -
Cre11g0573 656 FunFam protein indeterminate-domain 12-like 58 126 - -
Cre11g0573 656 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 595 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre11g0573 656 Pfam Zinc-finger of C2H2 type 79 101 IPR013087 -
Cre11g0573 656 MobiDBLite consensus disorder prediction 1 64 - -
Cre11g0573 656 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Cre11g0573 656 MobiDBLite consensus disorder prediction 28 42 - -
Cre11g0573 656 Gene3D Classic Zinc Finger 133 212 - -
Cre11g0573 656 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Cre11g0573 656 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 154 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g2152 Cre-Chr10:36064706 Cre11g0573 Cre-Chr11:2839629 3.70E-85 dispersed
Cre01g1377 Cre-Chr1:26983274 Cre11g0573 Cre-Chr11:2839629 2.20E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54637 PF12171 zf-C2H2_jaz 4.10E-05 CL0361 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0573 K25870 - csv:101219959 978.008