Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g0587 | ATGTGCCATTCCACCGACTCCACGGCCTTACAGGACTTCCGCCGCAGTTTTAGTTCTCAAATCGATGGATTGCACACCAACTGTTCGACGAATTGCTGCACTTGTACTGGCGTCACTTGTGATTCTTCTGGGAGGGTTGTGAAGATTGAACTTGGTGGGAGAAAGCTAGTTGGTCGACTACCAATCTCAATTGCAAGATTGGAACGCCTCAGAGTTCTTAATTTGTCCTCTAATTCCCTCACTGGGTCTATTCCTTTGGCTCTGTTTCAGCTCCCATACTTGGAAGTTCTTGATCTTAGCTTCAATCGGTTCTTGGGAAGCATCTCAACAGGTAACATCGATTTGCCTTCCCTTCGGATTCTTAATGTTTCTCATAATTCCTTCAACGGTGTTCTTCCATTTGGGGTTTGTGTCAACTCCTCTAGAATTGAGATTCTGAATCTGGGTTTCAATGATTTCGTTGGTATGTTTCCTTTTCAACTTGCTGAATGTGTTTCCTTGAAGAGACTGCATCTGGAATCGAATTTTATCAGTGGTGGGATACCTGATGAGGTTTTTGGATTGAGGAAATTGACCCATTTGTGTGTTCAGAACAACAAGCTTTCTGGTTCTTTGAGTAGTGTTGTTGGGAATCTAACAAGCCTTGTTCGGTTGGATTTGTCATCTAATGAGTTTTTTGGGGAAATTCCTGATGTTTTTTACGACTCTGTGAATTTGAGTTACTTTGTTGCTGAGTCTAATAGGTTTAGTGGGAAGATTCCCAATTCCTTGTCACACTCTGCTTCACTTACTGTCCTAAATTTGAGGAACAATTCAATAGGGGGAACTCTTGATCTTAATTGTACAGCAATGAGGAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCATGGATCTATGCCTAGTAATCTTCCCTCTTGTACCAAACTGAGAAGCATAAACCTTGCTAGGAACAAGCTTGGCGGTCAGATCCCTGAGAGCTTTAGAAACTTTCAGAGCCTATCATATTTATCACTTACGAACACGAGCATTGTTAATGTTTCATCTGCTCTTAATGTCTTGCAACATTGTCAAAATTTGAGAACTGTGGTTCTAACCTTTAACTTCCATGGTGAAGTGTTGGGGGATGATCCTAACTTGAATTTCAACAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATGATACCCCAGTGGTTGAGAGGTTCTAATAAGTTGCAGATGTTGGATTTGTCATGGAACCGTCTTGGAGGAAATATTCCATCCTGGTTTGGAGAGTTTCAGTTCTTGTTTTACTTGGATTTATCTAATAATTCATTCATCGGAGGTATCCCAAAAGAGATGACTGAAATGCAGAGTTACATTGACAGAAACTTCTTGCTTGATGAAACTGCTTCACCGGACTTTTCTCTTTTCGTGAAAAGAAATGGAACTGGATTGCAGTATAATCAATTATGGAGACTTCCACCAACTTTGAACCTCAGTCTCAACAATCTCAGTGGACAAATCTGGCCAGAGTTTGGAAATCTTAAGGAGATTCTAGTTCTTGATTTGAAAATCAACAGTTTGTCAGGATCAATTCCGAGCAGCCTCTCTGGGATGGTTAATTTAGAAACTCTAGATCTTTCTCACAACAATCTTTCAGGAATAATTCCACCTTCACTGCAAAAGCTCAATTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTACATGGGACGATTCTTAAAGGAGGTCAGTTTCATACCTTTGGTAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCAAGACGACCTCTGTGCATCAATTGACCAAGATCCTCTCATAGTATCCCGCAAATCAAGAACGGTCAAGGGGTCTCTTATAGGTATAATTCTCGGTATTATCTTTGGAATAATTTTTCTTGCAACACTTGTAGTTGTGTTTATGCTTCGGACACCACGGGGAAGAGTTGGAGATCCTGAAAATGAAGTGTCTAACATTGACAATAATGACTCGGAGGAAGTCAAGGCAGGATTGGTAGTTTTTTTCCAAAACAACAACAATGGAAGTCTCTCGCTGGATGATATTTTGAAATCGACGAATGACTTTGATCAAGAAAATATCATTGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCCACCCTTCCTGATGGTAGAAAGGTTGCTATAAAACGGTTGTCTGGTGATTGTGGTCAAATGGATAGAGAATTTCAAGCAGAAATCGAAACGCTTTCACGTGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGTTATTGTATGTATAAGAATGACAGGCTTTTGATTTATTCGTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGCCCATCTTGCCTCGACTGGGATACCAGACTGCAGATTGCCCGAGGGGCTGCTGGGGGGCTGGCTTATTTGCATCAATCCTGTGAACCCCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACGAAAATTTTAAAGCTCATTTAGCTGATTTTGGTCTTGCTAGACTCATTCTTCCCTATGATACCCACGTAACAACCGATCTTGTCGGTACCTTGGGCTACATTCCACCCGAGTACGGACAATCCTCGGTTGCGACCTACAAAGGGGATGTATACAGTTTTGGAGTTGTTTTATTAGAGCTTTTGACTGGTAAAAGGCCAATCGATATGTGCAGACCGAAAGGACTTCGAGACTTGATCTCTTGGGTGTTCCAAATGAGGAAAGACACAAAAGTAAGTGAAGTGTTCGACCCATTAGTATACGACAAGAAGAATGAGACATCGATGGCCGAAGTTCTTGATATAGCATGTCTTTGCTTATGTAAGGAACCTAAAGAGAGGCCTTCTACTCAACAGCTAGTTTCTTGGCTTGATAAAGGCAGCCGCCGCCGGTGGGTAATTTCGATACAGGGTTTTTCAGCTATGGCGCCTAAAGCTGACAGCACCAAAAAGGCTGATCCCAAAGCTCAAGCCCTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTCAAGAAGAAGGCTAAGAAAATCAGGACGTCGGTCACATTCCATCGCCCGAAAACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTAGGAACAAGTTGGATCAATATCAAATTCTTAAATATCCACTAACCACTGAGTCTGCGATGAAGAAAATTGAGGATAATAACACCCTTGTTTTTATTGTCGATATTCGTGCTGACAAGAAAAAGATTAAAGATGCGGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACTCTAATCAGGCCTGATGGAACAAAGAAGGCATACGTTAGGTTAACCCCAGACTACGACGCTTTGGACGTGGCGAACAAGATTGGAATTATCTAA | 3432 | 41.29 | MCHSTDSTALQDFRRSFSSQIDGLHTNCSTNCCTCTGVTCDSSGRVVKIELGGRKLVGRLPISIARLERLRVLNLSSNSLTGSIPLALFQLPYLEVLDLSFNRFLGSISTGNIDLPSLRILNVSHNSFNGVLPFGVCVNSSRIEILNLGFNDFVGMFPFQLAECVSLKRLHLESNFISGGIPDEVFGLRKLTHLCVQNNKLSGSLSSVVGNLTSLVRLDLSSNEFFGEIPDVFYDSVNLSYFVAESNRFSGKIPNSLSHSASLTVLNLRNNSIGGTLDLNCTAMRSLVTLDLGSNRFHGSMPSNLPSCTKLRSINLARNKLGGQIPESFRNFQSLSYLSLTNTSIVNVSSALNVLQHCQNLRTVVLTFNFHGEVLGDDPNLNFNSLQVFIIANCGLKGMIPQWLRGSNKLQMLDLSWNRLGGNIPSWFGEFQFLFYLDLSNNSFIGGIPKEMTEMQSYIDRNFLLDETASPDFSLFVKRNGTGLQYNQLWRLPPTLNLSLNNLSGQIWPEFGNLKEILVLDLKINSLSGSIPSSLSGMVNLETLDLSHNNLSGIIPPSLQKLNFLSKFSVAYNQLHGTILKGGQFHTFGNSSFEGNNFCVQDDLCASIDQDPLIVSRKSRTVKGSLIGIILGIIFGIIFLATLVVVFMLRTPRGRVGDPENEVSNIDNNDSEEVKAGLVVFFQNNNNGSLSLDDILKSTNDFDQENIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFQAEIETLSRAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGPSCLDWDTRLQIARGAAGGLAYLHQSCEPHILHRDIKSSNILLDENFKAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQMRKDTKVSEVFDPLVYDKKNETSMAEVLDIACLCLCKEPKERPSTQQLVSWLDKGSRRRWVISIQGFSAMAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII | 1143 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2970653 | 2978371 | - | CrPI670011_11g005870.1 | Cre11g0587 | 512332 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g0587 | 1143 | Gene3D | Ribonuclease Inhibitor | 249 | 611 | IPR032675 | - | |
Cre11g0587 | 1143 | ProSitePatterns | Ribosomal protein L23 signature. | 1121 | 1136 | IPR001014 | GO:0019843(InterPro) | |
Cre11g0587 | 1143 | Pfam | Protein kinase domain | 703 | 970 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre11g0587 | 1143 | SMART | LRR_typ_2 | 67 | 91 | IPR003591 | - | |
Cre11g0587 | 1143 | SMART | LRR_typ_2 | 115 | 139 | IPR003591 | - | |
Cre11g0587 | 1143 | SMART | LRR_typ_2 | 284 | 308 | IPR003591 | - | |
Cre11g0587 | 1143 | SMART | LRR_typ_2 | 188 | 211 | IPR003591 | - | |
Cre11g0587 | 1143 | SMART | LRR_typ_2 | 212 | 235 | IPR003591 | - | |
Cre11g0587 | 1143 | SMART | LRR_typ_2 | 538 | 561 | IPR003591 | - | |
Cre11g0587 | 1143 | Gene3D | Ribonuclease Inhibitor | 3 | 135 | IPR032675 | - | |
Cre11g0587 | 1143 | Gene3D | Ribonuclease Inhibitor | 136 | 248 | IPR032675 | - | |
Cre11g0587 | 1143 | FunFam | 60S ribosomal protein L23a | 1023 | 1143 | - | - | |
Cre11g0587 | 1143 | SMART | serkin_6 | 702 | 973 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre11g0587 | 1143 | PRINTS | Leucine-rich repeat signature | 70 | 83 | - | - | |
Cre11g0587 | 1143 | PRINTS | Leucine-rich repeat signature | 538 | 551 | - | - | |
Cre11g0587 | 1143 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 824 | 836 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre11g0587 | 1143 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 184 | 277 | - | - | |
Cre11g0587 | 1143 | ProSitePatterns | Protein kinases ATP-binding region signature. | 708 | 730 | IPR017441 | GO:0005524(InterPro) | |
Cre11g0587 | 1143 | SUPERFAMILY | Ribosomal proteins S24e, L23 and L15e | 1061 | 1136 | IPR012678 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Cre11g0587 | 1143 | ProSiteProfiles | Leucine-rich repeat profile. | 540 | 561 | IPR001611 | GO:0005515(InterPro) | |
Cre11g0587 | 1143 | SUPERFAMILY | L domain-like | 484 | 599 | - | - | |
Cre11g0587 | 1143 | Pfam | Ribosomal protein L23 | 1062 | 1123 | IPR013025 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Cre11g0587 | 1143 | SUPERFAMILY | Protein kinase-like (PK-like) | 686 | 973 | IPR011009 | - | |
Cre11g0587 | 1143 | Pfam | Ribosomal protein L23, N-terminal domain | 1003 | 1052 | IPR005633 | - | |
Cre11g0587 | 1143 | FunFam | Leucine-rich repeat receptor protein kinase MSP1 | 664 | 777 | - | - | |
Cre11g0587 | 1143 | FunFam | Leucine-rich repeat receptor-like protein kinase | 778 | 982 | - | - | |
Cre11g0587 | 1143 | Hamap | Large ribosomal subunit protein uL23 [rplW]. | 1063 | 1143 | IPR013025 | GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro) | |
Cre11g0587 | 1143 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 261 | 974 | IPR051420 | - | |
Cre11g0587 | 1143 | Pfam | Leucine Rich Repeat | 434 | 452 | IPR001611 | GO:0005515(InterPro) | |
Cre11g0587 | 1143 | Pfam | Leucine Rich Repeat | 409 | 430 | IPR001611 | GO:0005515(InterPro) | |
Cre11g0587 | 1143 | Pfam | Leucine Rich Repeat | 540 | 562 | IPR001611 | GO:0005515(InterPro) | |
Cre11g0587 | 1143 | Pfam | Leucine Rich Repeat | 214 | 233 | IPR001611 | GO:0005515(InterPro) | |
Cre11g0587 | 1143 | SUPERFAMILY | L domain-like | 2 | 179 | - | - | |
Cre11g0587 | 1143 | Gene3D | Transferase(Phosphotransferase) domain 1 | 778 | 984 | - | - | |
Cre11g0587 | 1143 | Gene3D | - | 1024 | 1143 | IPR012677 | - | |
Cre11g0587 | 1143 | SUPERFAMILY | RNI-like | 141 | 450 | - | - | |
Cre11g0587 | 1143 | Pfam | Leucine rich repeat | 69 | 127 | IPR001611 | GO:0005515(InterPro) | |
Cre11g0587 | 1143 | Pfam | Leucine rich repeat | 285 | 345 | IPR001611 | GO:0005515(InterPro) | |
Cre11g0587 | 1143 | FunFam | Tyrosine-sulfated glycopeptide receptor 1 | 281 | 611 | - | - | |
Cre11g0587 | 1143 | ProSiteProfiles | Protein kinase domain profile. | 702 | 982 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre11g0587 | 1143 | Gene3D | Phosphorylase Kinase; domain 1 | 662 | 777 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g0451 | Cre-Chr1:3821604 | Cre11g0587 | Cre-Chr11:2970653 | 7.80E-79 | dispersed | |
Cre05g0980 | Cre-Chr5:9047551 | Cre11g0587 | Cre-Chr11:2970653 | 1.10E-80 | dispersed | |
Cre05g1111 | Cre-Chr5:10434082 | Cre11g0587 | Cre-Chr11:2970653 | 2.50E-144 | dispersed | |
Cre07g0663 | Cre-Chr7:4368235 | Cre11g0587 | Cre-Chr11:2970653 | 1.90E-77 | dispersed | |
Cre08g0823 | Cre-Chr8:21347111 | Cre11g0587 | Cre-Chr11:2970653 | 1.50E-62 | dispersed | |
Cre09g1847 | Cre-Chr9:36870325 | Cre11g0587 | Cre-Chr11:2970653 | 8.40E-69 | dispersed | |
Cre11g0587 | Cre-Chr11:2970653 | Cre11g1014 | Cre-Chr11:7454804 | 4.30E-73 | dispersed | |
Cre09g0337 | Cre-Chr9:3280865 | Cre11g0587 | Cre-Chr11:2970653 | 5.30E-137 | transposed | |
Cre09g1826 | Cre-Chr9:36643270 | Cre11g0587 | Cre-Chr11:2970653 | 1.70E-35 | transposed | |
Cre11g0587 | Cre-Chr11:2970653 | Cre05g0950 | Cre-Chr5:8750622 | 2.50E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64520 | PF00069 | Pkinase | 4.40E-46 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g0587 | K27625 | - | csv:116404121 | 1654.03 |