Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0587 ATGTGCCATTCCACCGACTCCACGGCCTTACAGGACTTCCGCCGCAGTTTTAGTTCTCAAATCGATGGATTGCACACCAACTGTTCGACGAATTGCTGCACTTGTACTGGCGTCACTTGTGATTCTTCTGGGAGGGTTGTGAAGATTGAACTTGGTGGGAGAAAGCTAGTTGGTCGACTACCAATCTCAATTGCAAGATTGGAACGCCTCAGAGTTCTTAATTTGTCCTCTAATTCCCTCACTGGGTCTATTCCTTTGGCTCTGTTTCAGCTCCCATACTTGGAAGTTCTTGATCTTAGCTTCAATCGGTTCTTGGGAAGCATCTCAACAGGTAACATCGATTTGCCTTCCCTTCGGATTCTTAATGTTTCTCATAATTCCTTCAACGGTGTTCTTCCATTTGGGGTTTGTGTCAACTCCTCTAGAATTGAGATTCTGAATCTGGGTTTCAATGATTTCGTTGGTATGTTTCCTTTTCAACTTGCTGAATGTGTTTCCTTGAAGAGACTGCATCTGGAATCGAATTTTATCAGTGGTGGGATACCTGATGAGGTTTTTGGATTGAGGAAATTGACCCATTTGTGTGTTCAGAACAACAAGCTTTCTGGTTCTTTGAGTAGTGTTGTTGGGAATCTAACAAGCCTTGTTCGGTTGGATTTGTCATCTAATGAGTTTTTTGGGGAAATTCCTGATGTTTTTTACGACTCTGTGAATTTGAGTTACTTTGTTGCTGAGTCTAATAGGTTTAGTGGGAAGATTCCCAATTCCTTGTCACACTCTGCTTCACTTACTGTCCTAAATTTGAGGAACAATTCAATAGGGGGAACTCTTGATCTTAATTGTACAGCAATGAGGAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCATGGATCTATGCCTAGTAATCTTCCCTCTTGTACCAAACTGAGAAGCATAAACCTTGCTAGGAACAAGCTTGGCGGTCAGATCCCTGAGAGCTTTAGAAACTTTCAGAGCCTATCATATTTATCACTTACGAACACGAGCATTGTTAATGTTTCATCTGCTCTTAATGTCTTGCAACATTGTCAAAATTTGAGAACTGTGGTTCTAACCTTTAACTTCCATGGTGAAGTGTTGGGGGATGATCCTAACTTGAATTTCAACAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATGATACCCCAGTGGTTGAGAGGTTCTAATAAGTTGCAGATGTTGGATTTGTCATGGAACCGTCTTGGAGGAAATATTCCATCCTGGTTTGGAGAGTTTCAGTTCTTGTTTTACTTGGATTTATCTAATAATTCATTCATCGGAGGTATCCCAAAAGAGATGACTGAAATGCAGAGTTACATTGACAGAAACTTCTTGCTTGATGAAACTGCTTCACCGGACTTTTCTCTTTTCGTGAAAAGAAATGGAACTGGATTGCAGTATAATCAATTATGGAGACTTCCACCAACTTTGAACCTCAGTCTCAACAATCTCAGTGGACAAATCTGGCCAGAGTTTGGAAATCTTAAGGAGATTCTAGTTCTTGATTTGAAAATCAACAGTTTGTCAGGATCAATTCCGAGCAGCCTCTCTGGGATGGTTAATTTAGAAACTCTAGATCTTTCTCACAACAATCTTTCAGGAATAATTCCACCTTCACTGCAAAAGCTCAATTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTACATGGGACGATTCTTAAAGGAGGTCAGTTTCATACCTTTGGTAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCAAGACGACCTCTGTGCATCAATTGACCAAGATCCTCTCATAGTATCCCGCAAATCAAGAACGGTCAAGGGGTCTCTTATAGGTATAATTCTCGGTATTATCTTTGGAATAATTTTTCTTGCAACACTTGTAGTTGTGTTTATGCTTCGGACACCACGGGGAAGAGTTGGAGATCCTGAAAATGAAGTGTCTAACATTGACAATAATGACTCGGAGGAAGTCAAGGCAGGATTGGTAGTTTTTTTCCAAAACAACAACAATGGAAGTCTCTCGCTGGATGATATTTTGAAATCGACGAATGACTTTGATCAAGAAAATATCATTGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCCACCCTTCCTGATGGTAGAAAGGTTGCTATAAAACGGTTGTCTGGTGATTGTGGTCAAATGGATAGAGAATTTCAAGCAGAAATCGAAACGCTTTCACGTGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGTTATTGTATGTATAAGAATGACAGGCTTTTGATTTATTCGTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGCCCATCTTGCCTCGACTGGGATACCAGACTGCAGATTGCCCGAGGGGCTGCTGGGGGGCTGGCTTATTTGCATCAATCCTGTGAACCCCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACGAAAATTTTAAAGCTCATTTAGCTGATTTTGGTCTTGCTAGACTCATTCTTCCCTATGATACCCACGTAACAACCGATCTTGTCGGTACCTTGGGCTACATTCCACCCGAGTACGGACAATCCTCGGTTGCGACCTACAAAGGGGATGTATACAGTTTTGGAGTTGTTTTATTAGAGCTTTTGACTGGTAAAAGGCCAATCGATATGTGCAGACCGAAAGGACTTCGAGACTTGATCTCTTGGGTGTTCCAAATGAGGAAAGACACAAAAGTAAGTGAAGTGTTCGACCCATTAGTATACGACAAGAAGAATGAGACATCGATGGCCGAAGTTCTTGATATAGCATGTCTTTGCTTATGTAAGGAACCTAAAGAGAGGCCTTCTACTCAACAGCTAGTTTCTTGGCTTGATAAAGGCAGCCGCCGCCGGTGGGTAATTTCGATACAGGGTTTTTCAGCTATGGCGCCTAAAGCTGACAGCACCAAAAAGGCTGATCCCAAAGCTCAAGCCCTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTCAAGAAGAAGGCTAAGAAAATCAGGACGTCGGTCACATTCCATCGCCCGAAAACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTAGGAACAAGTTGGATCAATATCAAATTCTTAAATATCCACTAACCACTGAGTCTGCGATGAAGAAAATTGAGGATAATAACACCCTTGTTTTTATTGTCGATATTCGTGCTGACAAGAAAAAGATTAAAGATGCGGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACTCTAATCAGGCCTGATGGAACAAAGAAGGCATACGTTAGGTTAACCCCAGACTACGACGCTTTGGACGTGGCGAACAAGATTGGAATTATCTAA 3432 41.29 MCHSTDSTALQDFRRSFSSQIDGLHTNCSTNCCTCTGVTCDSSGRVVKIELGGRKLVGRLPISIARLERLRVLNLSSNSLTGSIPLALFQLPYLEVLDLSFNRFLGSISTGNIDLPSLRILNVSHNSFNGVLPFGVCVNSSRIEILNLGFNDFVGMFPFQLAECVSLKRLHLESNFISGGIPDEVFGLRKLTHLCVQNNKLSGSLSSVVGNLTSLVRLDLSSNEFFGEIPDVFYDSVNLSYFVAESNRFSGKIPNSLSHSASLTVLNLRNNSIGGTLDLNCTAMRSLVTLDLGSNRFHGSMPSNLPSCTKLRSINLARNKLGGQIPESFRNFQSLSYLSLTNTSIVNVSSALNVLQHCQNLRTVVLTFNFHGEVLGDDPNLNFNSLQVFIIANCGLKGMIPQWLRGSNKLQMLDLSWNRLGGNIPSWFGEFQFLFYLDLSNNSFIGGIPKEMTEMQSYIDRNFLLDETASPDFSLFVKRNGTGLQYNQLWRLPPTLNLSLNNLSGQIWPEFGNLKEILVLDLKINSLSGSIPSSLSGMVNLETLDLSHNNLSGIIPPSLQKLNFLSKFSVAYNQLHGTILKGGQFHTFGNSSFEGNNFCVQDDLCASIDQDPLIVSRKSRTVKGSLIGIILGIIFGIIFLATLVVVFMLRTPRGRVGDPENEVSNIDNNDSEEVKAGLVVFFQNNNNGSLSLDDILKSTNDFDQENIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFQAEIETLSRAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGPSCLDWDTRLQIARGAAGGLAYLHQSCEPHILHRDIKSSNILLDENFKAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQMRKDTKVSEVFDPLVYDKKNETSMAEVLDIACLCLCKEPKERPSTQQLVSWLDKGSRRRWVISIQGFSAMAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 1143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2970653 2978371 - CrPI670011_11g005870.1 Cre11g0587 512332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0587 1143 Gene3D Ribonuclease Inhibitor 249 611 IPR032675 -
Cre11g0587 1143 ProSitePatterns Ribosomal protein L23 signature. 1121 1136 IPR001014 GO:0019843(InterPro)
Cre11g0587 1143 Pfam Protein kinase domain 703 970 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0587 1143 SMART LRR_typ_2 67 91 IPR003591 -
Cre11g0587 1143 SMART LRR_typ_2 115 139 IPR003591 -
Cre11g0587 1143 SMART LRR_typ_2 284 308 IPR003591 -
Cre11g0587 1143 SMART LRR_typ_2 188 211 IPR003591 -
Cre11g0587 1143 SMART LRR_typ_2 212 235 IPR003591 -
Cre11g0587 1143 SMART LRR_typ_2 538 561 IPR003591 -
Cre11g0587 1143 Gene3D Ribonuclease Inhibitor 3 135 IPR032675 -
Cre11g0587 1143 Gene3D Ribonuclease Inhibitor 136 248 IPR032675 -
Cre11g0587 1143 FunFam 60S ribosomal protein L23a 1023 1143 - -
Cre11g0587 1143 SMART serkin_6 702 973 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0587 1143 PRINTS Leucine-rich repeat signature 70 83 - -
Cre11g0587 1143 PRINTS Leucine-rich repeat signature 538 551 - -
Cre11g0587 1143 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g0587 1143 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 184 277 - -
Cre11g0587 1143 ProSitePatterns Protein kinases ATP-binding region signature. 708 730 IPR017441 GO:0005524(InterPro)
Cre11g0587 1143 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1061 1136 IPR012678 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cre11g0587 1143 ProSiteProfiles Leucine-rich repeat profile. 540 561 IPR001611 GO:0005515(InterPro)
Cre11g0587 1143 SUPERFAMILY L domain-like 484 599 - -
Cre11g0587 1143 Pfam Ribosomal protein L23 1062 1123 IPR013025 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cre11g0587 1143 SUPERFAMILY Protein kinase-like (PK-like) 686 973 IPR011009 -
Cre11g0587 1143 Pfam Ribosomal protein L23, N-terminal domain 1003 1052 IPR005633 -
Cre11g0587 1143 FunFam Leucine-rich repeat receptor protein kinase MSP1 664 777 - -
Cre11g0587 1143 FunFam Leucine-rich repeat receptor-like protein kinase 778 982 - -
Cre11g0587 1143 Hamap Large ribosomal subunit protein uL23 [rplW]. 1063 1143 IPR013025 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cre11g0587 1143 PANTHER LEUCINE RICH REPEAT KINASE 2 261 974 IPR051420 -
Cre11g0587 1143 Pfam Leucine Rich Repeat 434 452 IPR001611 GO:0005515(InterPro)
Cre11g0587 1143 Pfam Leucine Rich Repeat 409 430 IPR001611 GO:0005515(InterPro)
Cre11g0587 1143 Pfam Leucine Rich Repeat 540 562 IPR001611 GO:0005515(InterPro)
Cre11g0587 1143 Pfam Leucine Rich Repeat 214 233 IPR001611 GO:0005515(InterPro)
Cre11g0587 1143 SUPERFAMILY L domain-like 2 179 - -
Cre11g0587 1143 Gene3D Transferase(Phosphotransferase) domain 1 778 984 - -
Cre11g0587 1143 Gene3D - 1024 1143 IPR012677 -
Cre11g0587 1143 SUPERFAMILY RNI-like 141 450 - -
Cre11g0587 1143 Pfam Leucine rich repeat 69 127 IPR001611 GO:0005515(InterPro)
Cre11g0587 1143 Pfam Leucine rich repeat 285 345 IPR001611 GO:0005515(InterPro)
Cre11g0587 1143 FunFam Tyrosine-sulfated glycopeptide receptor 1 281 611 - -
Cre11g0587 1143 ProSiteProfiles Protein kinase domain profile. 702 982 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0587 1143 Gene3D Phosphorylase Kinase; domain 1 662 777 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0451 Cre-Chr1:3821604 Cre11g0587 Cre-Chr11:2970653 7.80E-79 dispersed
Cre05g0980 Cre-Chr5:9047551 Cre11g0587 Cre-Chr11:2970653 1.10E-80 dispersed
Cre05g1111 Cre-Chr5:10434082 Cre11g0587 Cre-Chr11:2970653 2.50E-144 dispersed
Cre07g0663 Cre-Chr7:4368235 Cre11g0587 Cre-Chr11:2970653 1.90E-77 dispersed
Cre08g0823 Cre-Chr8:21347111 Cre11g0587 Cre-Chr11:2970653 1.50E-62 dispersed
Cre09g1847 Cre-Chr9:36870325 Cre11g0587 Cre-Chr11:2970653 8.40E-69 dispersed
Cre11g0587 Cre-Chr11:2970653 Cre11g1014 Cre-Chr11:7454804 4.30E-73 dispersed
Cre09g0337 Cre-Chr9:3280865 Cre11g0587 Cre-Chr11:2970653 5.30E-137 transposed
Cre09g1826 Cre-Chr9:36643270 Cre11g0587 Cre-Chr11:2970653 1.70E-35 transposed
Cre11g0587 Cre-Chr11:2970653 Cre05g0950 Cre-Chr5:8750622 2.50E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64520 PF00069 Pkinase 4.40E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0587 K27625 - csv:116404121 1654.03