Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0588 ATGTCTCGACTAGTTGTTGTTGCATTCACGTTGTTGCTTCTGGGTTTAGCATGCAATGCCCAACTTTCTTCTTCGTTTTATGACCAAACTTGTCCCTCTGCACTCACCACTATTAGATCAGTTATTAGGCAAGCAATCTCTCAAGAACGTCGTATGGCTGCGTCTCTCATTCGCCTCCATTTCCATGATTGTTTTGTTCAGGGATGCGATGCATCGATATTGCTTGATGATACTCCCTCGATGATTGGCGAACAAAATGCAGCACCCAACATAAATTCTGCTAGGGGTTACGGAGTGATACACAAGGCCAAGACTGAAGTTGAGAAGATATGTCCTGGTGTGGTATCTTGTGCAGATATTCTTGCTATAGCTGCAAAAGATGCTTCTTTTATTGTTGGTGGTCCATCTTGGACAGTAAGACTTGGAAGAAGAGACTCTACCACTGCAAGCAAAGCTCTAGCAGAGAGACTTAGTACGAGAGATATGGTTGCATTGTCAGGTTCTCATACTATAGGACAAGCACAATGCTTTCTTTTCCGCAATAGGATATACAACCAAAGTAATATTGATGCAGGATTTGCTAGCACACGCCGTAGAAATTGTCCAACATCAAGTGGAAATGGAAATTTGGCACCACTTGATTTGGTCACACCCAATTCTTTTGACAATAATTACTTCAAAAATCTTGTTCAAAGAAAGGGTTTGCTAGAAACAGATCAAGTTCTCTTTAATGGAGGATCAACAGATAATATTATTACAGAGTACAGTAGAGATCCAACCGCATTCAAATCTGACTTTGCAGCTGCAATGATTAAAATGGGAGACATTCAACCTCTCACTGGTTCAGAAGGACAAATAAGAAACATATGTGGTGTTGTTAATTAA 885 40.45 MSRLVVVAFTLLLLGLACNAQLSSSFYDQTCPSALTTIRSVIRQAISQERRMAASLIRLHFHDCFVQGCDASILLDDTPSMIGEQNAAPNINSARGYGVIHKAKTEVEKICPGVVSCADILAIAAKDASFIVGGPSWTVRLGRRDSTTASKALAERLSTRDMVALSGSHTIGQAQCFLFRNRIYNQSNIDAGFASTRRRNCPTSSGNGNLAPLDLVTPNSFDNNYFKNLVQRKGLLETDQVLFNGGSTDNIITEYSRDPTAFKSDFAAAMIKMGDIQPLTGSEGQIRNICGVVN 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2986905 2988037 + CrPI670011_11g005880.1 Cre11g0588 512333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0588 294 Pfam Peroxidase 38 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0588 294 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601(InterPro)
Cre11g0588 294 CDD secretory_peroxidase 21 293 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre11g0588 294 Gene3D - 274 294 - -
Cre11g0588 294 Gene3D - 26 153 - -
Cre11g0588 294 PANTHER PEROXIDASE 72-RELATED 11 155 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0588 294 FunFam Peroxidase 146 273 - -
Cre11g0588 294 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Cre11g0588 294 SUPERFAMILY Heme-dependent peroxidases 21 294 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0588 294 ProSitePatterns Peroxidases proximal heme-ligand signature. 161 171 IPR019793 -
Cre11g0588 294 ProSiteProfiles Plant heme peroxidase family profile. 21 294 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0588 294 Gene3D Peroxidase, domain 2 154 273 - -
Cre11g0588 294 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0588 294 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0588 294 PRINTS Plant peroxidase signature 268 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0588 294 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0588 294 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0588 294 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0588 294 PRINTS Plant peroxidase signature 228 245 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0588 294 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0588 294 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0588 294 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0588 294 PRINTS Haem peroxidase superfamily signature 214 229 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g0588 294 FunFam Peroxidase 25 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g0588 Cre-Chr11:2986905 Cre11g1063 Cre-Chr11:8063455 4.50E-99 dispersed
Cre11g0588 Cre-Chr11:2986905 Cre11g0589 Cre-Chr11:2992064 2.70E-144 tandem
Cre11g0563 Cre-Chr11:2663100 Cre11g0588 Cre-Chr11:2986905 6.90E-146 transposed
Cre11g0588 Cre-Chr11:2986905 Cre05g0955 Cre-Chr5:8816769 8.60E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0588 K00430 - csv:116403994 524.628