Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0629 ATGAAAGCTCCTCCAAATGGGTTTCTGGCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGGCCTCTCGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCACAAGGCCACAGTGAACAAGTTGCAGCATCGATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGATCTGCATGCTCCACAATGTCACATTACATGCTGATCCTGAAACGGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAGCAGGCAGCCTGCAGAATTCTTCTGCAAAACTCTAACAGCTAGTGACACCAGCACTCATGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATCTTCCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGACATATTTACCGCGGCCAACCAAAACGTCACCTTCTGACCACTGGTTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCTGGAGACTCAGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTCTCTTCATCAGTTATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCATGCTGCTGCGAACAACAGTCCTTTTACTATATTTTACAACCCCAGGGCCAGTCCTTCTGAATTTGTGATACCTTTGGCCAAGTATAATAAAGCAATGTATACGCAAGTTTCACTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTACGCAGATATATGGGTACGATTACTGGTATCAGCGACATGGATTCTGTACGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCTAATCGAGTTTCAATATGGGAAGTTGAGCCTGTTGTGACTCCCTTTTACATATGTCCGCCTCCATTCTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGATGAATCTGATATTGAAAATGCTTTTAAGAGAGCCATGCCATGGTTTGGTGATGACTTTGGCATGAAAGATACACCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTCCTAGTGCTCTGCATGGAACGCTTACTAATGAAGACCCATCCAAATTATTGAGTTTTCAAGCACCAGTACTGTCTTCACCAAATCTCCAATTCAGCAAAGCAACTCAACAGAACCAAGCTGGCCAATTGCCTCCAACTGCGTGGTCTCAACAGCAGCAGCTGCAGCAATTATTACAAGTTCCTGCAAGCCAACAGTTACAGCAGCAGCAGTTGCCACCCCAGCAGGAACTACAGCAGCTGCCCCAGCAGCAGCAACTCCAGTCGCAACAGCCACAACGGCAACAACAGACCTCGCAATCTGTTCTTCTGAACAACAGTGTAACTGCTGCTAACCATTTGCCAAATCCAAGTTTGCAACAACCACTTGTATACTCTCAGCTACAACAACAACAATTGCTTGCAGGCAATATTCAATCACATCAAACTAGCCAACCATCTAACAAGAACTCATTTCAGACTACATTATCGGAAGAAACGCAGTTTCAGCCACAAATAGAGCAACAACCTAGCCTTCTTCCGAGACACCAGCAGCCAACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTGTCTCAAAGAGCACCACAGCAGCCACAAGTTCAGCAATTTTCACAGCCAATCCCAACTGAGCAACAACTTCAATTGCAGCTGCTACAGAAGCTGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACCATTGCTCTCCCCAGCTAGCCCACTATTACCACCTCAGCTGCTACAGCAGCAGCATGTTCATCAGCAAAACCAGCAGATGCCACCATTGCCGTTGCCCAATCAGCAGCAGTTCAGTACTAGTGGTGGCAGCTTCCAAACAGAAAAACTTAACACCAATGGCTTCGCAAGTTTAGGTCTCATGCAGTCCCAGCAGGTTCCTATAACCCAATCCCATAACCAATTCAAACCAACCACCGCAATTAGAGCATACTCTGGACTGACTGATGGAGATGCTCCATCTTGTTCAACCTCACCTTCCACTAATAACTGCGCAGTTTCAGTATCAAACCTGCTCAATAAGAACCAACAAGGAGCAGCCACACTTGGTGGAGATTCAGTAGTTGAGCCTGCAACTAACCCGACACAGGAGCTACAGAGCAAACCTGATTTGCGGATCAAACATGAGTTTCCTAACTCAAAAGGATTGGACCAACTAAAGTATAAAGGCACTGTTCCTGATCAGTTAGAAGCATCTTCTTCTGGGACGTCATATTGTTTGGATGCTGGCACCATTCAGCAGACTCTCCCACTCCCTACATGTTTGGATAATGATGTACAATCACATCCACGTAACAATATCCCTTTCAGTAATAGCATTGATGGATTGACACCAGATACCTTATTGTCGAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGGGGTGTGCCAAGAGATATTGAAACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCCTTTGGGGTTCCAAACCTGCCTTTCAAGCCTGGCTGCTCAAATGATGTCAATGTGAATGAAGCTGGAGCTTTGAGTAGTGGATTGTGGGCAAACCACAGTCAACGTATGCGTACATATACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATCGACGTCACTCGCTACAAAGGATATGAGGAGCTTAGGCATGATCTTGCCCGCATGTTTGGCATTGAAGGGCAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGACCATGAAAATGATATACTTCTAGTTGGTGATGATCCTTGGGAGGAGTTCGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGGAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGTGGGACAGATAGTGGAAATGCATGGAGAGGGCAGTCCAATCAGCTCCTGAGGCAAGGGCTGCAGGAAACAGTAACTCAGTCAATGTCCGATACTGCGAATATGGAGACGGGCTTGCCAATCAATTGTGATTTCTAG 3378 45.47 MKAPPNGFLANSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVPSALHGTLTNEDPSKLLSFQAPVLSSPNLQFSKATQQNQAGQLPPTAWSQQQQLQQLLQVPASQQLQQQQLPPQQELQQLPQQQQLQSQQPQRQQQTSQSVLLNNSVTAANHLPNPSLQQPLVYSQLQQQQLLAGNIQSHQTSQPSNKNSFQTTLSEETQFQPQIEQQPSLLPRHQQPTQFQQAPLQLLQQSLSQRAPQQPQVQQFSQPIPTEQQLQLQLLQKLQQQQQQQQQQQQQQQPLLSPASPLLPPQLLQQQHVHQQNQQMPPLPLPNQQQFSTSGGSFQTEKLNTNGFASLGLMQSQQVPITQSHNQFKPTTAIRAYSGLTDGDAPSCSTSPSTNNCAVSVSNLLNKNQQGAATLGGDSVVEPATNPTQELQSKPDLRIKHEFPNSKGLDQLKYKGTVPDQLEASSSGTSYCLDAGTIQQTLPLPTCLDNDVQSHPRNNIPFSNSIDGLTPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYEELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQSNQLLRQGLQETVTQSMSDTANMETGLPINCDF 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3472763 3483671 + CrPI670011_11g006290.1 Cre11g0629 512374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0629 1125 CDD B3_DNA 125 226 IPR003340 GO:0003677(InterPro)
Cre11g0629 1125 Pfam Auxin response factor 252 334 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre11g0629 1125 Gene3D - 124 227 IPR015300 -
Cre11g0629 1125 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677(InterPro)
Cre11g0629 1125 ProSiteProfiles PB1 domain profile. 976 1069 IPR053793 -
Cre11g0629 1125 Gene3D - 971 1065 - -
Cre11g0629 1125 Coils Coil 657 678 - -
Cre11g0629 1125 Gene3D - 289 360 - -
Cre11g0629 1125 SUPERFAMILY CAD & PB1 domains 989 1054 - -
Cre11g0629 1125 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677(InterPro)
Cre11g0629 1125 FunFam Auxin response factor 124 228 - -
Cre11g0629 1125 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Cre11g0629 1125 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 635 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cre11g0629 1125 MobiDBLite consensus disorder prediction 577 621 - -
Cre11g0629 1125 Pfam AUX/IAA family 973 1063 IPR033389 -
Cre11g0629 1125 MobiDBLite consensus disorder prediction 695 728 - -
Cre11g0629 1125 FunFam Auxin response factor 289 361 - -
Cre11g0629 1125 SMART B3_2 126 228 IPR003340 GO:0003677(InterPro)
Cre11g0629 1125 MobiDBLite consensus disorder prediction 507 539 - -
Cre11g0629 1125 FunFam Auxin response factor 971 1065 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2020 Cre-Chr5:32216306 Cre11g0629 Cre-Chr11:3472763 7.40E-175 dispersed
Cre08g1024 Cre-Chr8:23401708 Cre11g0629 Cre-Chr11:3472763 1.30E-62 dispersed
Cre09g0908 Cre-Chr9:9117104 Cre11g0629 Cre-Chr11:3472763 4.50E-17 dispersed
Cre09g1706 Cre-Chr9:35179143 Cre11g0629 Cre-Chr11:3472763 4.40E-118 dispersed
Cre11g0629 Cre-Chr11:3472763 Cre11g1577 Cre-Chr11:25551383 7.10E-246 dispersed
Cre11g0629 Cre-Chr11:3472763 Cre04g2093 Cre-Chr4:38145730 3.30E-174 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54640 PF02309 AUX_IAA 1.70E-09 CL0072 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0629 K14486 - csv:101210917 1745.33