Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0650 ATGCCGGTGCATCTCACGCCCAATGCAATCTCTGCCATTGTCGCTGGTGACGTTAATTCCAAGCCTCTGGTGCAGGTCCTAGATATCAAGCTGATTGGTAACGCGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCGGTTTCTGCTGAGCAGGCTATGCTCGCAACTCAGCTTAATGATATCATTAAGACTGGACGAGTCAAGAAAGGATCCGTTATCCAGTTGATCGATTATGTCTGCAGTCCCATCAAGAACCGGAAGATTATTGTTGTGCTCTGCCTGGAAACTATTATATTGGATTGTGAGATAATTGGGAATCCAAAATCATCTGCTCAATCAGAGAATTTTGCACAAAAGGCAACGCGATCTGGAAATTTAGAGCAGCCTGCCAATGGTAATGGTCATTTGAGTGCCAGAAATCCAGTTCAGGATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCATATCAGCCACCTCCAAATTATAAAAATCACGGTGCAATCATTAAGAATGAGGCACCGGCTCGTATAATTCCCATAGCTGCACTGAATCCTTATCAGGGACGATGGGCTATAAAAGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTATAATAATGCAAAAGGAGATGGTAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACTTGCTTCAATGCTGTTGTGGATCGTTTCTACGAGGTCATAGAAGTTGGTAAAGTCTACATGATTTCTAAAGGTAGCCTAAAACCGGCGCGGAAGGATTTCAATCATCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAAGTTTGCCCAGATGAAGATGATACCATACCAAGACAGCAGTTTTCTTTTAGACCTATCAGTGAAATTGAGAATGCTGAAACCAACTCCATTCTGGACGTTATTGGTATTGTAACATCTGTCAATCCATCAATTCCTGTTTTGAGAAAAAATGGTATGGAAACTCAAAGAAGAGTTGTGAATTTGAAGGATGCGTCTGGCAGGAGTGTTGAGCTGACACTCTGGGGGGATTTTTGCAACAAAGAAGGTCAAAAATTGCAAGAAATAATTTACTCGGGCCTTTCTCCAGTTTTAGCTGTGAAATCTGGGAAGGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACTCAGCTTTTCATAAATCCAGATCTTTCTGAGGCTCACATCTTGAGGAACTGGTACGATGGTGGTGGGAAGAATACTACTTCTCTATCTATTTCTAAAGAAATCATGCCAGGATCTGCCAAGAATGAGATTCGGAAGACTGTGTCTCAGATTAAAGATGAAGGACTTGGCAGAGCTGATAAGCCAGATTGGATAACGGTGAAAGCAACAATATCCTTTATCAAAACAGATTCTTTCTGCTACACAGCATGTCCATTAATGATCGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCAAAGTGGCTGTGTGACAGGTGCAATCAAGAATTTGAGGATTGCGATTATAGATATCTTCTTCAAGCCCAAATCCAAGATCATACTGGATTGACATGGGTGACAGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTATGAAGAGCAAGACGATGTCAAGTTTGGTGAAATAATAAGCAGCAAAATTTTCGATCAATTTCTTTTTAGGCTCAAAATTAAGGAGGAGACGTATGGGGATGAACAGAGGGTGAAAAATACTGTAGTCAAGGCAGATAAGGTTGAATGCCGTGGAGGACTTCGAGCACATCAAGAAGTGAATTTACAGCAGGAGCCGCATATTGATTATTACACACAAAACACAGAAACAACCATTACAGACAATGAAACATCATGA 1926 42.11 MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNAQERYSLLISDAVSAEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKNRKIIVVLCLETIILDCEIIGNPKSSAQSENFAQKATRSGNLEQPANGNGHLSARNPVQDVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYMISKGSLKPARKDFNHLKNEWEVFLEASSTVEVCPDEDDTIPRQQFSFRPISEIENAETNSILDVIGIVTSVNPSIPVLRKNGMETQRRVVNLKDASGRSVELTLWGDFCNKEGQKLQEIIYSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFINPDLSEAHILRNWYDGGGKNTTSLSISKEIMPGSAKNEIRKTVSQIKDEGLGRADKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEEQDDVKFGEIISSKIFDQFLFRLKIKEETYGDEQRVKNTVVKADKVECRGGLRAHQEVNLQQEPHIDYYTQNTETTITDNETS 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3614684 3618959 + CrPI670011_11g006500.1 Cre11g0650 512395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0650 641 Pfam Replication factor-A C terminal domain 462 606 IPR013955 -
Cre11g0650 641 NCBIfam replication factor-a protein 1 (rpa1) 4 606 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cre11g0650 641 Pfam Replication protein A OB domain 300 404 IPR031657 -
Cre11g0650 641 Gene3D - 430 611 IPR012340 -
Cre11g0650 641 FunFam Replication protein A subunit 289 427 - -
Cre11g0650 641 SUPERFAMILY Nucleic acid-binding proteins 294 425 IPR012340 -
Cre11g0650 641 Gene3D - 3 111 IPR012340 -
Cre11g0650 641 SUPERFAMILY Nucleic acid-binding proteins 176 290 IPR012340 -
Cre11g0650 641 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Cre11g0650 641 FunFam Replication protein A subunit 176 285 - -
Cre11g0650 641 Gene3D - 289 429 IPR012340 -
Cre11g0650 641 FunFam Replication protein A subunit 4 111 - -
Cre11g0650 641 SUPERFAMILY Nucleic acid-binding proteins 443 604 IPR012340 -
Cre11g0650 641 CDD RPA1N 9 98 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cre11g0650 641 CDD RPA1_DBD_B 311 418 - -
Cre11g0650 641 CDD RPA1_DBD_C 446 604 IPR047192 -
Cre11g0650 641 PANTHER REPLICATION FACTOR A 1, RFA1 178 599 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Cre11g0650 641 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Cre11g0650 641 Pfam OB-fold nucleic acid binding domain 192 262 IPR004365 GO:0003676(InterPro)
Cre11g0650 641 Gene3D - 176 286 IPR012340 -
Cre11g0650 641 FunFam Replication protein A subunit 428 612 - -
Cre11g0650 641 CDD RPA1_DBD_A 179 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0650 K07466 - - csv:101207583 1161.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2422 Cre-Chr6:32119016 Cre11g0650 Cre-Chr11:3614684 1.80E-81 dispersed
Cre10g0366 Cre-Chr10:2441668 Cre11g0650 Cre-Chr11:3614684 2.00E-195 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g104 . Blo16g00969 . Bda11g01026 . . . . . . . . . . . . . . . . . . . . Cla11g00142 Cam11g0164 Cec11g0165 Cco11g0176 Clacu11g0299 Cmu11g0152 Cre11g0650 . . . . . Csa02g00027 Chy05g01462 . . . . . . Bpe13g01237 . Bma06g00893 Sed04g0901 . . . . . . . . Bhi06g01596 Tan08g0026 Cmetu06g1804 . Hepe08g2687 . . . . . . . . . Lsi11g00167 . . Cme05g02064
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g0009 . 105 876 Core DNA Replication Machinery Family AT4G14700 59.1 3.0e-254 875.2
Cre08g0009 . 105 876 Core DNA Replication Machinery Family AT4G12620 61.2 1.6e-263 906.0
Cre08g1518 . 65 425 Core DNA Replication Machinery Family AT2G37560 65.7 3.0e-142 501.9
Cre07g0857 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.9e-152 535.0
Cre06g1130 . 2 453 Core DNA Replication Machinery Family AT4G29910 60.4 6.1e-153 538.1
Cre11g1348 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.1 4.2e-94 341.7
Cre01g0220 . 61 854 Core DNA Replication Machinery Family AT1G79150 59.6 2.1e-247 852.4
Cre10g1454 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1350.9
Cre04g2057 . 128 702 Core DNA Replication Machinery Family AT5G46280 81.0 8.9e-269 922.9
Cre02g0837 . 99 845 Core DNA Replication Machinery Family AT2G16440 77.2 0.0e+00 1142.5
Cre11g0844 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Cre04g2202 . 7 835 Core DNA Replication Machinery Family AT5G44635 71.2 0.0e+00 1167.9
Cre09g0492 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cre02g2271 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.8e-163 571.2
Cre02g2271 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.1e-143 506.1
Cre09g0839 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.0 1.1e-256 882.9
Cre10g2170 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1094.3
Cre09g1589 . 58 456 Core DNA Replication Machinery Family AT2G14050 85.7 3.5e-197 685.3
Cre09g1588 . 9 238 Core DNA Replication Machinery Family AT2G14050 68.7 2.5e-86 317.0
Cre02g1504 . 1 411 Core DNA Replication Machinery Family AT2G20980 56.4 6.9e-119 424.5
Cre09g0257 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.1e-72 270.0
Cre11g1099 . 1 184 Core DNA Replication Machinery Family AT1G19080 69.0 4.3e-71 264.6
Cre11g1099 . 1 184 Core DNA Replication Machinery Family AT3G55490 69.0 4.3e-71 264.6
Cre05g0223 . 6 155 Core DNA Replication Machinery Family AT5G49010 65.3 2.8e-49 192.2
Cre02g1551 . 1 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1769.6
Cre01g1501 . 24 641 Core DNA Replication Machinery Family AT1G67630 59.5 9.8e-205 710.3
Cre06g0976 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.5 2.9e-183 638.6
Cre08g0134 . 211 654 Core DNA Replication Machinery Family AT5G41880 65.5 1.7e-177 619.4
Cre04g1149 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.5 0.0e+00 1788.9
Cre10g1868 . 1 428 Core DNA Replication Machinery Family AT2G42120 74.8 8.5e-195 676.8
Cre06g0976 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.5 2.9e-183 638.6
Cre09g1984 . 1 127 Core DNA Replication Machinery Family AT1G09815 61.5 5.5e-38 154.1
Cre02g2512 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2983.0
Cre01g0417 . 62 2110 Core DNA Replication Machinery Family AT1G08260 67.8 0.0e+00 2775.3
Cre02g2512 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2947.9
Cre01g0417 . 84 2190 Core DNA Replication Machinery Family AT2G27120 65.2 0.0e+00 2722.6
Cre01g1601 . 726 1192 Core DNA Replication Machinery Family AT5G22110 66.2 6.7e-180 627.5
Cre02g2561 . 273 1004 Core DNA Replication Machinery Family AT5G22010 73.4 1.2e-302 1036.2
Cre10g0592 . 3 332 Core DNA Replication Machinery Family AT1G63160 91.5 2.4e-173 605.1
Cre04g0578 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.2e-178 622.9
Cre11g2009 . 19 337 Core DNA Replication Machinery Family AT1G21690 81.6 2.3e-144 508.8
Cre08g0540 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.1 1.9e-155 545.8
Cre11g0650 . 26 604 Core DNA Replication Machinery Family AT2G06510 68.1 4.8e-244 840.9
Cre10g0366 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.3 4.1e-195 678.3
Cre06g2422 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.1 7.0e-248 853.6
Cre10g0366 . 10 812 Core DNA Replication Machinery Family AT5G45400 50.7 9.6e-227 783.9
Cre06g2422 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 3.3e-240 828.2
Cre10g0366 . 5 798 Core DNA Replication Machinery Family AT4G19130 53.7 3.7e-225 778.5
Cre03g2054 . 1 376 Core DNA Replication Machinery Family AT5G26680 85.7 6.4e-184 640.6
Cre05g0360 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.5 8.0e-300 1026.9
Cre07g1923 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 1.4e-115 412.9
Cre02g2464 . 2 762 Core DNA Replication Machinery Family AT1G08130 69.1 1.4e-296 1015.8
Cre02g2464 . 162 762 Core DNA Replication Machinery Family AT1G49250 69.1 2.1e-242 835.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010255 1 3 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32