Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0655 ATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGATTTTAAAGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGATGTCGAAGAATTTTATCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTTTATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCCTGGCTTCTGGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCGGACAGGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGCGAGGTTCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGATGAGGACGAGGGACTGGATGAGGAAGATGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGTGGGGAGAATTATGCATCAGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAGTACAAATGCCCTTCGTGCAGCAATAAGAGAGCACGGCCCTGA 756 47.09 MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQLCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKLSKGLAKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3648964 3651494 + CrPI670011_11g006550.1 Cre11g0655 512400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0655 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Cre11g0655 251 PANTHER CPG BINDING PROTEIN 7 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cre11g0655 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cre11g0655 251 Pfam PHD-finger 198 244 IPR019787 -
Cre11g0655 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cre11g0655 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cre11g0655 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cre11g0655 251 FunFam PHD finger alfin-like protein 190 246 - -
Cre11g0655 251 SMART PHD_3 197 245 IPR001965 -
Cre11g0655 251 MobiDBLite consensus disorder prediction 145 191 - -
Cre11g0655 251 MobiDBLite consensus disorder prediction 145 164 - -
Cre11g0655 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0774 Cre-Chr7:6112809 Cre11g0655 Cre-Chr11:3648964 2.60E-47 dispersed
Cre10g2315 Cre-Chr10:37383209 Cre11g0655 Cre-Chr11:3648964 3.00E-85 dispersed
Cre08g0932 Cre-Chr8:22526059 Cre11g0655 Cre-Chr11:3648964 1.90E-100 transposed
Cre10g0950 Cre-Chr10:12917239 Cre11g0655 Cre-Chr11:3648964 1.90E-98 transposed
Cre11g0655 Cre-Chr11:3648964 Cre03g1798 Cre-Chr3:34815448 8.40E-38 wgd
Cre11g0655 Cre-Chr11:3648964 Cre09g0076 Cre-Chr9:1041870 3.70E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54643 PF12165 Alfin 9.00E-70 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0655 K26274 - rcu:8272513 460.685