Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0662 ATGACTTCCGTGGCGGTTGCCGTTAACGGCGTCCGCGGCGGCAAAGGCGGCGGAGCAAGCCGCCGCGCTGTCAGATGGGCCGTCGAAAATCTCTTGCCGACCGCCGATCGCTTCATTTTGGTTCACGTTATGCCCAAAATCACCTCCATCCCCACCCCAATGGGGGATCTTGTTGCTGTCTCTGAACTTGATGCAGATGTGGTAGCTCTTTATGTTCATGATATGAAACAGAAATATGAACAAGTTTTTGTACCTTTTAAGAAGTTATGTAGAAGAGAAAAGTTTCTTCTTCTGGTAGAAACTTTGATTTTGGAGGATGACAATCCTGCCACTGCCCTTTTGAGATATGCATCTCAATCTGGGATTAAATGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAGATAAAAGGGGATTCAGTACCCTCTGCTATTATGAGAACTGCTCCTAGTTCTTTGGATATTTATGTTATATATAAGAGAAGAGTTATCACACGAACCGCTAGTACTGCTCCATCTAGTGAAACTGACTCGAGGCAGTGGATGCTTGGTGACACTGATTATTACAGGGGTTTCAGTGCTGTTAGTGAAAAATTATCAGGAACTTCCTCTCCTTCTTCCTTGTCGATTGGACATCGAAGGGGTGATAGCCTCGAAGTTAACTCTACTGAGCAACTTAACTCTTTGAGCACTCTGACTGAGGAGGAAGATATGCGGGCTGAAGTTGAATCTCTGCAGCTAGAACTAGAGACCACTGTTTCCTTGTACAATCAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTTCAGTCACTTACATCAGAATGCCTTGAAGAATCAAGAAAAGTGAATGCTGCTTTGGAAAGGGAACAATCTTTGAGGAAAGTTGCTGCTAAAGAGAAAGCAAAGCATTTGGAAGCCATTAAAGAGCTTGAGGAGGCTAAAGACTTGCTGGCTAAAGAAGCTTATGAGAGGCAGCTGGCTGAGCTTAATGCCATAAAGGAGTCCGTGGAGAAGCAGAAAATTCTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGATATACCACTGCCGAAATAGAAGCTGCGACAAATTTCTTCGACGAAGTTAATGTGATTGGCATGGGAGGATATGGGAAAGTCTACAAATGCAGTCTCGATCATACACCTGTAGCCATTAAGGTTTTTCAACATGACATATTCGAGAAAAAAGACGAGTTTCTAAAAGAGGTTGAAATTCTAAGTCAGATACGACATCCGCACGTGGTTTTACTGCTTGGAGCTTGTCCCGAGCGAGGTTGTTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGACCATATCTTGCTCCGGAAAGGAAAAGCTCCCCTCCCTTGGTCTATTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGCCTTGCATTTTTACACAATTCAAAGCCAGAGCCTATCATTCATAGAGATCTCAAACCGGGTAATATCTTACTGGACAGAAACTTTGTAAGTAAAATCTCAGATGTTGGAATGGCTAAGATCATTGGTGATATTGTGCCGGACAATGTCACGGAGTACCGAAACACCATTCTTGCTGGTACTCTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGGCCAAAGTCAGATACGTACGCACTTGGGGTAACAATTCTGCAGTTGTTGACTGGGCGAGAACCACACGGTCTTCTTCTGGCTATTGAAAACTCCATCGCAAGCGCGTCCCTTGCAGATATTCTAGACAAGTCAATAACTGACTGGCCTCTAGCTGAAGCTGAAGAGTTAGCTCAACTCGCACTCAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAATCTGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATTCTTGTCAAAATGAAGGCAAAAATCCTGCTAATCCCCCAAGCCACTACTTCTGCCCAATCCTACAGGAAATTATGGAGGACCCTTATATAGCAGCCGATGGCTTTACTTATGAGTATGTAGCCATTAAAGCATGGCTCGAGAAATACGACGTATCGCCGGTGACAAAGCTTAAGCTTCAGCATTCTATTTTTATTCCAAACCACACTCTGCTCTCTGCCATACTAGAGTGGAAGTCAAGAGTGACATTTCCATCTTCCTAA 2190 43.33 MTSVAVAVNGVRGGKGGGASRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDMKQKYEQVFVPFKKLCRREKFLLLVETLILEDDNPATALLRYASQSGIKCLVLGSCFRTCIARKIKGDSVPSAIMRTAPSSLDIYVIYKRRVITRTASTAPSSETDSRQWMLGDTDYYRGFSAVSEKLSGTSSPSSLSIGHRRGDSLEVNSTEQLNSLSTLTEEEDMRAEVESLQLELETTVSLYNQACEELVHAQKKVQSLTSECLEESRKVNAALEREQSLRKVAAKEKAKHLEAIKELEEAKDLLAKEAYERQLAELNAIKESVEKQKILDTLLTNDRRYRRYTTAEIEAATNFFDEVNVIGMGGYGKVYKCSLDHTPVAIKVFQHDIFEKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRKGKAPLPWSIRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGREPHGLLLAIENSIASASLADILDKSITDWPLAEAEELAQLALKCLKLRCRDRPDLESEVLPVLKRLVDFADSCQNEGKNPANPPSHYFCPILQEIMEDPYIAADGFTYEYVAIKAWLEKYDVSPVTKLKLQHSIFIPNHTLLSAILEWKSRVTFPSS 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3696276 3699698 - CrPI670011_11g006620.1 Cre11g0662 512407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0662 729 Pfam Universal stress protein family 18 154 IPR006016 -
Cre11g0662 729 SUPERFAMILY Protein kinase-like (PK-like) 355 628 IPR011009 -
Cre11g0662 729 Pfam Protein kinase domain 374 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0662 729 Pfam U-box domain 656 721 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre11g0662 729 Coils Coil 259 279 - -
Cre11g0662 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 725 IPR013083 -
Cre11g0662 729 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 153 - -
Cre11g0662 729 ProSiteProfiles U-box domain profile. 654 727 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre11g0662 729 SMART serkin_6 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0662 729 ProSiteProfiles Protein kinase domain profile. 372 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0662 729 Gene3D Phosphorylase Kinase; domain 1 351 444 - -
Cre11g0662 729 FunFam Os07g0541700 protein 445 535 - -
Cre11g0662 729 Gene3D HUPs 2 158 IPR014729 -
Cre11g0662 729 Gene3D Transferase(Phosphotransferase) domain 1 445 652 - -
Cre11g0662 729 SMART Ubox_2 658 720 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre11g0662 729 CDD RING-Ubox_WDSUB1-like 656 710 - -
Cre11g0662 729 Coils Coil 298 344 - -
Cre11g0662 729 MobiDBLite consensus disorder prediction 201 220 - -
Cre11g0662 729 PANTHER OS02G0152300 PROTEIN 4 717 IPR051348 -
Cre11g0662 729 ProSitePatterns Protein kinases ATP-binding region signature. 378 399 IPR017441 GO:0005524(InterPro)
Cre11g0662 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g0662 729 CDD STK_N 3 163 - -
Cre11g0662 729 SUPERFAMILY RING/U-box 646 723 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2595 Cre-Chr6:33656428 Cre11g0662 Cre-Chr11:3696276 8.70E-08 dispersed
Cre11g0662 Cre-Chr11:3696276 Cre11g1565 Cre-Chr11:25312035 3.90E-104 dispersed
Cre09g2062 Cre-Chr9:39670722 Cre11g0662 Cre-Chr11:3696276 8.50E-130 transposed
Cre11g0662 Cre-Chr11:3696276 Cre05g1006 Cre-Chr5:9274467 7.00E-77 wgd
Cre11g0662 Cre-Chr11:3696276 Cre09g0072 Cre-Chr9:967500 1.70E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64524 PF00069 Pkinase 1.70E-41 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0662 - - - 0.0