Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0685 ATGATCGTCGGCGAGCAGCCCAAACGCCCCAATCCGACGGTTCAGGTTCCACCGTGGACGTTTATGGAGGATTCGGTGATGGATGTGTACAGTCATTCGCCGGGGAGCGGTGGCAGCAGTGGTTCCGTTAAGTGTGACGGATGTTCCAGCGGAGGCGGATACTCTCCTTATTATCTGCAGGAAGCGTTGGCGATGCTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATTTTGATGTTTCAGGTCGGGAGTTGGATTCTCCGGTGGATGCTTACTCTTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTACGAGAGGACGATCGCACGACTGGACTGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAGGTATTACTATTCAGGTACGGCATGTGCGGATTTTCGGAAAGGGAGCTGTATGAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGCTATCGGACTCAGCCATGCAAGGATGGGACGAGTTGTCGGAGAAGAGTTTGTTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTTTGCCTCAACAAAGCCCTCGGAGTACGAGTTCCATCCCTTCGTACGATGGATCGCCTCTCCGGCAAGCAATCGAGGCCTGTGCAAAGCAAATGCCCTATTTATCTTCTCCAGGAACATCGCCGCCAGTATCTCCTCGAATCGAGTCTCCACCTCAATCGCCGATGATTAAGTCACTAAATCGACCTCACGCAACAAGTTCGATCAACGAAATGGTTGCATCACTGCGAAGTTTACAGCTCAATAAGGAACTCTGTAAGGTACAATCTCCTTCTTCCTCGTGGAATGTTCAAGTCGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCGCTAGATCCGGTTTATGTAGCCTTCCAGAAACTCCGACTCGTCCAGTTGCCCGTTATCTCGATTTCTGGGACCTAGGCTGCGGAGAGGAACCGGCGATGGAGCGAGTGGAGTCCGGAAGAGATCTTCGTGCAAAAATGTTTGAAAAATTGAGGAAGGAGAACTCCGTCGGCTGCGGCGATCAAGACAAATACAGCGGTGGCGGAGGTCTGGATGTCGGTTGGATCTCGGAGCTCCTCAAGTAA 1179 51.99 MIVGEQPKRPNPTVQVPPWTFMEDSVMDVYSHSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDFDVSGRELDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSPGTSPPVSPRIESPPQSPMIKSLNRPHATSSINEMVASLRSLQLNKELCKVQSPSSSWNVQVGSPVFGSPKESTARSGLCSLPETPTRPVARYLDFWDLGCGEEPAMERVESGRDLRAKMFEKLRKENSVGCGDQDKYSGGGGLDVGWISELLK 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3909882 3911060 - CrPI670011_11g006850.1 Cre11g0685 512430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0685 392 Gene3D - 103 165 - -
Cre11g0685 392 SUPERFAMILY CCCH zinc finger 138 168 IPR036855 GO:0046872(InterPro)
Cre11g0685 392 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872(InterPro)
Cre11g0685 392 FunFam Zinc finger CCCH domain-containing protein 66 97 165 - -
Cre11g0685 392 SMART c3hfinal6 139 165 IPR000571 GO:0046872(InterPro)
Cre11g0685 392 SMART c3hfinal6 174 197 IPR000571 GO:0046872(InterPro)
Cre11g0685 392 PANTHER UNKEMPT FAMILY MEMBER 55 392 IPR045234 -
Cre11g0685 392 MobiDBLite consensus disorder prediction 237 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1935 Cre-Chr5:31535587 Cre11g0685 Cre-Chr11:3909882 4.70E-87 dispersed
Cre07g0609 Cre-Chr7:3900216 Cre11g0685 Cre-Chr11:3909882 4.60E-57 dispersed
Cre07g2041 Cre-Chr7:36029384 Cre11g0685 Cre-Chr11:3909882 9.40E-46 dispersed
Cre08g1626 Cre-Chr8:28770826 Cre11g0685 Cre-Chr11:3909882 2.40E-63 dispersed
Cre10g1828 Cre-Chr10:32838409 Cre11g0685 Cre-Chr11:3909882 2.10E-50 dispersed
Cre11g0685 Cre-Chr11:3909882 Cre03g1859 Cre-Chr3:35516935 1.40E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54646 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0685 - - - 0.0