Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0696 ATGTCGTGGCAAGTTTACGTCGATGATCATTTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCAAGACGGCAGTGTTTGGGCTAAAAGCGAAAATTTCCCTCAGCTCAAGCCTGAAGAAATTACTGGCATCTTGAATGACTTCAATGAACCCGGGACGCTTGCTCCGACTGGTTTGTACATTGGTGGTTCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGCTCTGGCTTTAGTCATTGGCATCTATGATGAACCAATGACTCCTGGTCAGTGCAATATGATTGTTGAAAGGCTTGGGGATTATCTCGTCGAACAGGGCCTCTAA 396 47.22 MSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAKSENFPQLKPEEITGILNDFNEPGTLAPTGLYIGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTALALVIGIYDEPMTPGQCNMIVERLGDYLVEQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4054355 4055701 + CrPI670011_11g006960.1 Cre11g0696 512441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0696 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Cre11g0696 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cre11g0696 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Cre11g0696 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cre11g0696 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Cre11g0696 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Cre11g0696 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Cre11g0696 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Cre11g0696 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cre11g0696 131 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Cre11g0696 131 Gene3D Dynein light chain 2a, cytoplasmic 2 131 - -
Cre11g0696 131 FunFam Profilin 1 131 - -
Cre11g0696 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Cre11g0696 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cre11g0696 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cre11g0696 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Cre11g0696 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Cre11g0696 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cre11g0696 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cre11g0696 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Cre11g0696 131 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1699 Cre-Chr7:32460181 Cre11g0696 Cre-Chr11:4054355 7.90E-56 dispersed
Cre11g0696 Cre-Chr11:4054355 Cre11g1922 Cre-Chr11:30977833 6.90E-60 dispersed
Cre11g0695 Cre-Chr11:4050903 Cre11g0696 Cre-Chr11:4054355 1.60E-59 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0696 K05759 - cit:102628130 250.366