Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0697 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCAAGTGGAACATTTCACGACGGCAATCTACTACTTAACCAGAAAGGATTACGGCTTGTATCTGAAGAGAAAGAAGCGCAGACTTCAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTTGAGACTGTGAAAGTTATTGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAGTGGGTTGGACAACTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGCGGTTCTCTAGCCGATGTAGTCAGACAAATCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGGCATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCGATGCTAGCAAGTTCTATGGGTCAAAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAACGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATCGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTAGAGGCAATTGTAGCAAAGCCACCGCCTTCTGCCCCACCGGATCAATTTTCCCCCGAGTTCTGTTCCTTCGTTTCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCGTCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGACATGGGAGACAAAGAGAAGATTGAAGCTTTTGAAGCTATGGAAATTGTTAGAAGATGCATCGTCGTCTTCTTTAACGTCTAATGTTTCGTCATTGTCGTTGGCGACAACGGTATCATCATCGGAGGGACCTCTCTATGAACTCTCAGAGCTCATGGCCCATCTCCCCATCAAGAGAGGGTTATCAAAGTTCTACGATGGAAAATCACAATCTTTTACATCTCTAGCAAGTGCAAAGAGCTTAGAAGATCTTGCAAAGAGAGTGAATAATATTTCTCAAAGGAAAAGGATGAAGTCTTGTAAGAGCTATGGAGGAGGTTTTGATGCTCAAAAATCTTCTTATTCTCCAAAGCCTTTGATTGCTAAAAAAGTTTCAAAGGGTTCTTCTTTGCTATCTCCTGTTTCTAAGAGAAATAATAGGCTATTTGATAGCCATTCTTGA 1488 40.99 MKTKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKEAQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGQLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQIKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVGSLDPPTWETKRRLKLLKLWKLLEDASSSSLTSNVSSLSLATTVSSSEGPLYELSELMAHLPIKRGLSKFYDGKSQSFTSLASAKSLEDLAKRVNNISQRKRMKSCKSYGGGFDAQKSSYSPKPLIAKKVSKGSSLLSPVSKRNNRLFDSHS 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4058159 4066813 + CrPI670011_11g006970.1 Cre11g0697 512442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0697 495 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0697 495 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0697 495 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
Cre11g0697 495 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Cre11g0697 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g0697 495 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Cre11g0697 495 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 45 351 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cre11g0697 495 SMART serkin_6 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0697 495 SUPERFAMILY Protein kinase-like (PK-like) 67 374 IPR011009 -
Cre11g0697 495 MobiDBLite consensus disorder prediction 474 495 - -
Cre11g0697 495 CDD PKc_MAPKK_plant_like 67 333 - -
Cre11g0697 495 Gene3D Transferase(Phosphotransferase) domain 1 150 345 - -
Cre11g0697 495 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0697 K04368 - - csv:101218848 673.315
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1805 Cre-Chr3:34901700 Cre11g0697 Cre-Chr11:4058159 2.70E-125 dispersed
Cre07g1779 Cre-Chr7:33258926 Cre11g0697 Cre-Chr11:4058159 3.80E-55 dispersed
Cre08g1200 Cre-Chr8:25265709 Cre11g0697 Cre-Chr11:4058159 2.20E-06 dispersed
Cre11g0661 Cre-Chr11:3692369 Cre11g0697 Cre-Chr11:4058159 1.00E-113 dispersed
Cre11g0697 Cre-Chr11:4058159 Cre11g1922 Cre-Chr11:30977833 1.60E-27 dispersed
Cre08g0921 Cre-Chr8:22364769 Cre11g0697 Cre-Chr11:4058159 1.40E-07 transposed
Cre10g1535 Cre-Chr10:29314766 Cre11g0697 Cre-Chr11:4058159 1.30E-65 transposed
Cre05g1744 Cre-Chr5:29164764 Cre11g0697 Cre-Chr11:4058159 6.20E-07 transposed
Cre11g0697 Cre-Chr11:4058159 Cre03g1872 Cre-Chr3:35647610 8.80E-23 wgd
Cre11g0697 Cre-Chr11:4058159 Cre07g1698 Cre-Chr7:32449872 1.80E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g255 . . . . Bpe01g00566 . . Bma11g00544 Cmo10g00705 Cmo11g00669 . . . . Sed08g0828 Cpe04g01087 Cpe18g00393 Bhi02g01946 Tan09g1197 Cmetu02g1395 . Hepe09g0826 . . Cla11g00184 Cam11g0214 Cec11g0215 Cco11g0228 Clacu11g0348 Cmu11g0198 Cre11g0697 . . . . Lsi06g00228 Csa02g00083 . Cme02g00193 Blo08g00323 Blo14g00525 Bda02g00408 Bda09g01123 . . . . Sed01g1248 . . Cma10g00677 Cma11g00657 Car10g00610 Car11g00540 . . Bhi06g01690 Tan08g0110 Cmetu05g0946 . Hepe08g2629 . . Cla03g01541 Cam03g1620 Cec03g1662 Cco03g1662 Clacu03g1644 Cmu03g2197 Cre03g1872 Lsi11g00219 Csa01g02876 Chy02g01171 Cme05g02011
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre03g1805 . 28 333 MAP Kinase Kinase Gene Family AT4G26070 71.6 1.1e-128 456.8
Cre11g0661 . 27 330 MAP Kinase Kinase Gene Family AT4G26070 66.9 1.0e-118 423.7
Cre11g0697 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 56.3 1.2e-108 390.2
Cre03g1805 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 2.5e-133 472.2
Cre11g0661 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.4 3.2e-117 418.7
Cre11g0697 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.7 4.5e-111 398.3
Cre10g1535 . 78 529 MAP Kinase Kinase Gene Family AT5G40440 80.3 6.5e-215 743.8
Cre07g1779 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 68.6 1.4e-134 476.5
Cre07g1779 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 63.9 1.4e-128 456.4
Cre01g1381 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 2.2e-84 309.7
Cre11g0697 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 84.0 2.2e-169 592.0
Cre03g1805 . 7 332 MAP Kinase Kinase Gene Family AT5G56580 61.5 8.4e-116 414.1
Cre11g0661 . 1 330 MAP Kinase Kinase Gene Family AT5G56580 56.0 5.6e-104 374.8
Cre01g1381 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.6 5.0e-109 391.3
Cre01g1381 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.6 6.5e-82 301.2
Cre01g1381 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.4 6.2e-115 411.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64526 PF00069 Pkinase 4.30E-66 CL0016 Cre PK