Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0697 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCAAGTGGAACATTTCACGACGGCAATCTACTACTTAACCAGAAAGGATTACGGCTTGTATCTGAAGAGAAAGAAGCGCAGACTTCAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTTGAGACTGTGAAAGTTATTGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAGTGGGTTGGACAACTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGCGGTTCTCTAGCCGATGTAGTCAGACAAATCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGGCATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCGATGCTAGCAAGTTCTATGGGTCAAAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAACGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATCGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTAGAGGCAATTGTAGCAAAGCCACCGCCTTCTGCCCCACCGGATCAATTTTCCCCCGAGTTCTGTTCCTTCGTTTCTGCTTGCATTAAGAAGGACCCTAAAGAAAGATCGTCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGACATGGGAGACAAAGAGAAGATTGAAGCTTTTGAAGCTATGGAAATTGTTAGAAGATGCATCGTCGTCTTCTTTAACGTCTAATGTTTCGTCATTGTCGTTGGCGACAACGGTATCATCATCGGAGGGACCTCTCTATGAACTCTCAGAGCTCATGGCCCATCTCCCCATCAAGAGAGGGTTATCAAAGTTCTACGATGGAAAATCACAATCTTTTACATCTCTAGCAAGTGCAAAGAGCTTAGAAGATCTTGCAAAGAGAGTGAATAATATTTCTCAAAGGAAAAGGATGAAGTCTTGTAAGAGCTATGGAGGAGGTTTTGATGCTCAAAAATCTTCTTATTCTCCAAAGCCTTTGATTGCTAAAAAAGTTTCAAAGGGTTCTTCTTTGCTATCTCCTGTTTCTAAGAGAAATAATAGGCTATTTGATAGCCATTCTTGA 1488 40.99 MKTKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKEAQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGQLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQIKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVGSLDPPTWETKRRLKLLKLWKLLEDASSSSLTSNVSSLSLATTVSSSEGPLYELSELMAHLPIKRGLSKFYDGKSQSFTSLASAKSLEDLAKRVNNISQRKRMKSCKSYGGGFDAQKSSYSPKPLIAKKVSKGSSLLSPVSKRNNRLFDSHS 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4058159 4066813 + CrPI670011_11g006970.1 Cre11g0697 512442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0697 495 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0697 495 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0697 495 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
Cre11g0697 495 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Cre11g0697 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g0697 495 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Cre11g0697 495 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 45 351 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cre11g0697 495 SMART serkin_6 69 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0697 495 SUPERFAMILY Protein kinase-like (PK-like) 67 374 IPR011009 -
Cre11g0697 495 MobiDBLite consensus disorder prediction 474 495 - -
Cre11g0697 495 CDD PKc_MAPKK_plant_like 67 333 - -
Cre11g0697 495 Gene3D Transferase(Phosphotransferase) domain 1 150 345 - -
Cre11g0697 495 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1805 Cre-Chr3:34901700 Cre11g0697 Cre-Chr11:4058159 2.70E-125 dispersed
Cre07g1779 Cre-Chr7:33258926 Cre11g0697 Cre-Chr11:4058159 3.80E-55 dispersed
Cre08g1200 Cre-Chr8:25265709 Cre11g0697 Cre-Chr11:4058159 2.20E-06 dispersed
Cre11g0661 Cre-Chr11:3692369 Cre11g0697 Cre-Chr11:4058159 1.00E-113 dispersed
Cre11g0697 Cre-Chr11:4058159 Cre11g1922 Cre-Chr11:30977833 1.60E-27 dispersed
Cre08g0921 Cre-Chr8:22364769 Cre11g0697 Cre-Chr11:4058159 1.40E-07 transposed
Cre10g1535 Cre-Chr10:29314766 Cre11g0697 Cre-Chr11:4058159 1.30E-65 transposed
Cre05g1744 Cre-Chr5:29164764 Cre11g0697 Cre-Chr11:4058159 6.20E-07 transposed
Cre11g0697 Cre-Chr11:4058159 Cre03g1872 Cre-Chr3:35647610 8.80E-23 wgd
Cre11g0697 Cre-Chr11:4058159 Cre07g1698 Cre-Chr7:32449872 1.80E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64526 PF00069 Pkinase 4.30E-66 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0697 K04368 - csv:101218848 673.315