Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0713 ATGGCCGACGCCACCGTGCCGGAGACCGACTCCGGTGGCAGCGCCAATTCCTGGTCCTCGTCTTCTTCCTCGACGTCATGTTCGATCTCGTCTCCGTCGAAACAAGTCGGTAGCCGAACGTCGTCGAAGCGCAGTCGAGAGAGTAGCAACAATAGTCGTCACCCAAGTTACCGAGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCGAAGAAGAAGAGTCGGATCTGGCTCGGCACCTTCGCCACACCCGACATGGCGGCACGTGCTCACGACGTAGCCGCCCTTACTATCAAAGGCAATTCAGCCATCCTCAATTTCCCTGAACTCGCCGCCTCATTACCCCGCCCCGCCTCCTCGTCCCCTCGGGACGTTCAATCCGCCGCCGCCCTCGCCGCTTCAATGCAACTTCCTGACGTCGTCTCACCTCCTCCACCACCGCCACCCCCACCCTCATCGCCTCCCTTCTCGTCATCGTCCGAGTTGGACGAGTCGACACCGGAGGAATTGAGTGAAATTGTGGTGCTGCCCAGTTTGGGAACGGGGTACGAGGAATCGGCCGAGTCAGTGACCGAGTTTGTGTTTGACGAGTGGCAATATAGCTATGAGCCGTGGGATCAACAAAATCAAAGCTCAAAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTATAGATCAAATGGCAATGGCGGAAAAAGAGTGTGTGATTCCCACTGCATTATTTCAACCTTTACCTTTCTCGTGGTAA 762 55.64 MADATVPETDSGGSANSWSSSSSSTSCSISSPSKQVGSRTSSKRSRESSNNSRHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPDVVSPPPPPPPPPSSPPFSSSSELDESTPEELSEIVVLPSLGTGYEESAESVTEFVFDEWQYSYEPWDQQNQSSKEEEEEAYEYFIDQMAMAEKECVIPTALFQPLPFSW 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4246311 4247072 - CrPI670011_11g007130.1 Cre11g0713 512458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0713 253 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g0713 253 SMART rav1_2 56 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g0713 253 Coils Coil 218 238 - -
Cre11g0713 253 MobiDBLite consensus disorder prediction 142 176 - -
Cre11g0713 253 Pfam AP2 domain 55 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g0713 253 MobiDBLite consensus disorder prediction 9 45 - -
Cre11g0713 253 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 39 201 IPR051032 -
Cre11g0713 253 CDD AP2 55 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g0713 253 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g0713 253 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g0713 253 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g0713 253 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677(InterPro)
Cre11g0713 253 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Cre11g0713 253 MobiDBLite consensus disorder prediction 1 60 - -
Cre11g0713 253 MobiDBLite consensus disorder prediction 144 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0097 Cre-Chr8:2118342 Cre11g0713 Cre-Chr11:4246311 9.30E-27 dispersed
Cre10g0498 Cre-Chr10:4143869 Cre11g0713 Cre-Chr11:4246311 1.40E-36 dispersed
Cre11g0713 Cre-Chr11:4246311 Cre11g1934 Cre-Chr11:31117500 4.50E-39 dispersed
Cre11g0713 Cre-Chr11:4246311 Cre06g1719 Cre-Chr6:14667212 8.40E-46 wgd
Cre11g0713 Cre-Chr11:4246311 Cre07g1686 Cre-Chr7:32302488 8.20E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54648 PF00847 AP2 7.40E-13 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0713 K09286 - csv:101212945 341.273