Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0723 ATGGAACCTTCATCGGCCAAGAGCTGGAGCATCCACACTCGGCCGGATATCATCCAGAAGTACGAGATCCTCGAGCGGGTCGGATCCGGCGCTTATTCCGATGTCCACCGTGCGCGGCGGCTCTCCGATGGCGTTATCGTCGCCTTGAAGGAGATCCACGATTATCAGTCGGCGTTCCGCGAAATCGAGGCGCTTCAAATCCTTCAAGGTTCGCCTAATATCGTCGTTCTGCACGAGTACTTTTGGCGCGAGGATGAGGATGCCGTGCTTGTTCTCGAGTTTATGAGAACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGATCGGACCGGGTAGAATCTGGGCGGGGGCTTCCGGCCGGGGAGTTGAAGCGGTGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCATAGGAATATGATCGTGCATAGGGATATGAAACCTAGCAATTTGTTGATCTCCGATGATGGCGTGCTCAAGCTTGCCGATTTTGGACAGGCAAGGATACTCATGGAGCCTGAATATGTTGAATCGAATGAGATCTCTCAACCATGTGAGATGAACTCTTCAGATCAGGTGCCTGCTTCTCAGCCATCTACAATTTTTCCAGGAACAGAAAGCTCGGTTCGAGAAGGTAACAGAACTGAGGAACAAGAACCAATTAGCAAAGAAGAATATTTTAGAGTTTTAGACGAGTTGAAAGCAAAAAATTCAGCAAATGAATTTGACAAGGAAACATATACTTATGATGGAGATACATCTTGCTTAGCAACATGTACCACAAGTGACCTTGAAGATGATCCATTCAAAGGTTCATCATATTCTTACGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACAAGGTTCTCTCACCTCGTGTGTCGGTACTCGCTGGTTCAGGGCCCCTGAATTACTCTATGGCTCTACGAGCTACGGTTTGGAGATCGACTTATGGTCATTGGGCTGCATTTTTGCTGAACTTTTTACATTGGAACCCCTTTTTCCAGGAACTGCTGACATTGATCAAATGAGCAAAATCTTCACTACTCTAGGCAACTTGACTGAAGATTCGTGGCCAGGTTGTTCCGAACTTCCTGATTTTCAAATTATATCATTCAACACAATAGAAAAGCCGATCGGTCTAGAAGCATGTCTTCCCAACTGTTCTCCTGATGAAATTTCTATTGTTAAAAGACTTCTTTGTTACAACCCGGCTAATCGAGCGACTGCTATGGAATTGTTACAAGATAAGTATTTCACTGAGGAGCCACTTCCCGTTCCCTTGTCTGAGCTTCATGTTCCTACGACAAAAACTGGACAGGATGAGTATTCTCCTGCAGGATGGTACGACTACAATGAGTCGGATTCTGATATGGATGAATTCGGCCCCATGAATGTTACCACCACTGCCACTGGTTACTCCATTCAATTTGATTGA 1449 46.31 MEPSSAKSWSIHTRPDIIQKYEILERVGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFMRTDLATVIAEAKKRGSDRVESGRGLPAGELKRWMIQILSGLDACHRNMIVHRDMKPSNLLISDDGVLKLADFGQARILMEPEYVESNEISQPCEMNSSDQVPASQPSTIFPGTESSVREGNRTEEQEPISKEEYFRVLDELKAKNSANEFDKETYTYDGDTSCLATCTTSDLEDDPFKGSSYSYEMEGGVPADDGQGSLTSCVGTRWFRAPELLYGSTSYGLEIDLWSLGCIFAELFTLEPLFPGTADIDQMSKIFTTLGNLTEDSWPGCSELPDFQIISFNTIEKPIGLEACLPNCSPDEISIVKRLLCYNPANRATAMELLQDKYFTEEPLPVPLSELHVPTTKTGQDEYSPAGWYDYNESDSDMDEFGPMNVTTTATGYSIQFD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4363799 4365759 + CrPI670011_11g007230.1 Cre11g0723 512468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0723 482 Gene3D Transferase(Phosphotransferase) domain 1 270 433 - -
Cre11g0723 482 MobiDBLite consensus disorder prediction 188 223 - -
Cre11g0723 482 Gene3D Phosphorylase Kinase; domain 1 13 109 - -
Cre11g0723 482 FunFam Cyclin-dependent kinase F-1 12 106 - -
Cre11g0723 482 PANTHER CELL DIVISION PROTEIN KINASE 20 423 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0019912(PANTHER)
Cre11g0723 482 Gene3D Transferase(Phosphotransferase) domain 1 110 199 - -
Cre11g0723 482 Pfam Protein kinase domain 21 179 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0723 482 Pfam Protein kinase domain 292 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0723 482 SUPERFAMILY Protein kinase-like (PK-like) 7 441 IPR011009 -
Cre11g0723 482 ProSiteProfiles Protein kinase domain profile. 21 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0723 482 MobiDBLite consensus disorder prediction 188 212 - -
Cre11g0723 482 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524(InterPro)
Cre11g0723 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g0723 482 SMART serkin_6 21 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0723 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g0723 Cre-Chr11:4363799 Cre05g2344 Cre-Chr5:35045280 5.20E-36 dispersed
Cre11g0723 Cre-Chr11:4363799 Cre03g1910 Cre-Chr3:36136732 3.00E-28 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g2344 . 1 291 Core Cell Cycle Gene Families AT3G48750 86.3 1.5e-150 529.3
Cre04g0711 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 1.0e-95 347.1
Cre11g2295 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.0 3.7e-93 338.6
Cre04g0711 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 5.1e-154 540.8
Cre11g2295 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.0 1.0e-117 420.2
Cre05g2344 . 1 293 Core Cell Cycle Gene Families AT3G54180 53.9 5.1e-93 338.2
Cre04g0711 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 2.9e-123 438.3
Cre11g2295 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.5 3.1e-93 338.6
Cre11g2295 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 2.5e-156 548.5
Cre04g0711 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 1.0e-117 420.2
Cre05g2344 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 1.0e-93 340.5
Cre11g2295 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 4.9e-160 560.8
Cre04g0711 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 3.8e-120 428.3
Cre05g2344 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 5.9e-97 351.3
Cre02g2717 . 57 571 Core Cell Cycle Gene Families AT5G10270 77.4 1.1e-219 759.6
Cre10g1554 . 23 484 Core Cell Cycle Gene Families AT5G10270 77.3 1.8e-209 725.7
Cre03g1910 . 840 1158 Core Cell Cycle Gene Families AT5G10270 51.6 1.1e-97 354.4
Cre05g1117 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.5e-97 353.2
Cre08g0070 . 137 453 Core Cell Cycle Gene Families AT5G10270 53.0 2.5e-97 353.2
Cre05g0708 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.9 4.2e-97 352.4
Cre03g0691 . 93 409 Core Cell Cycle Gene Families AT5G10270 53.2 1.2e-96 350.9
Cre11g0557 . 150 466 Core Cell Cycle Gene Families AT5G10270 52.1 4.7e-96 349.0
Cre02g2078 . 193 509 Core Cell Cycle Gene Families AT5G10270 52.6 4.0e-95 345.9
Cre02g1945 . 101 419 Core Cell Cycle Gene Families AT5G10270 50.4 2.2e-93 340.1
Cre01g1537 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.1 1.6e-91 334.0
Cre02g2077 . 128 444 Core Cell Cycle Gene Families AT5G10270 50.6 2.0e-91 333.6
Cre02g2717 . 121 570 Core Cell Cycle Gene Families AT5G64960 72.5 4.9e-177 617.8
Cre10g1554 . 87 537 Core Cell Cycle Gene Families AT5G64960 71.5 5.6e-173 604.4
Cre02g2078 . 247 509 Core Cell Cycle Gene Families AT5G64960 53.6 1.3e-81 300.8
Cre05g1117 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.3e-81 300.1
Cre03g0691 . 147 409 Core Cell Cycle Gene Families AT5G64960 52.9 5.1e-81 298.9
Cre03g1910 . 894 1158 Core Cell Cycle Gene Families AT5G64960 50.7 8.6e-81 298.1
Cre11g0557 . 204 466 Core Cell Cycle Gene Families AT5G64960 52.9 1.1e-80 297.7
Cre08g0070 . 191 453 Core Cell Cycle Gene Families AT5G64960 53.2 1.5e-80 297.4
Cre02g2077 . 182 444 Core Cell Cycle Gene Families AT5G64960 53.2 4.3e-80 295.8
Cre05g0708 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.8 4.3e-80 295.8
Cre06g2316 . 4 414 Core Cell Cycle Gene Families AT1G73690 74.0 4.1e-172 601.3
Cre06g2316 . 12 342 Core Cell Cycle Gene Families AT1G66750 77.7 2.3e-155 545.4
Cre06g2316 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.5 4.3e-174 607.8
Cre04g0167 . 32 505 Core Cell Cycle Gene Families AT5G63610 74.8 4.7e-199 691.0
Cre11g0723 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.8 2.8e-175 612.1
Cre08g0548 . 5 498 Core Cell Cycle Gene Families AT1G44110 56.6 2.5e-144 509.2
Cre09g0228 . 225 503 Core Cell Cycle Gene Families AT1G44110 55.2 1.5e-88 323.9
Cre05g1879 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.1 6.4e-84 308.5
Cre05g2222 . 124 403 Core Cell Cycle Gene Families AT1G44110 52.5 1.2e-82 304.3
Cre08g1567 . 85 373 Core Cell Cycle Gene Families AT1G44110 50.2 1.8e-78 290.4
Cre08g1231 . 305 566 Core Cell Cycle Gene Families AT1G44110 53.4 3.2e-75 279.6
Cre09g0228 . 224 499 Core Cell Cycle Gene Families AT1G77390 51.4 3.3e-77 286.2
Cre05g1879 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.1 1.2e-74 277.7
Cre05g2222 . 129 401 Core Cell Cycle Gene Families AT1G77390 50.5 1.7e-73 273.9
Cre08g1231 . 305 562 Core Cell Cycle Gene Families AT1G77390 50.8 1.4e-67 254.2
Cre05g1879 . 16 484 Core Cell Cycle Gene Families AT5G25380 53.9 5.3e-120 428.3
Cre08g1231 . 138 578 Core Cell Cycle Gene Families AT5G25380 51.0 1.0e-102 370.9
Cre09g0228 . 223 503 Core Cell Cycle Gene Families AT5G25380 63.7 6.1e-100 361.7
Cre08g0548 . 216 491 Core Cell Cycle Gene Families AT5G25380 55.1 3.7e-81 299.3
Cre05g2222 . 128 396 Core Cell Cycle Gene Families AT5G25380 51.7 5.2e-75 278.9
Cre02g1013 . 119 343 Core Cell Cycle Gene Families AT5G25380 52.2 8.1e-60 228.4
Cre05g1879 . 3 422 Core Cell Cycle Gene Families AT5G11300 51.1 1.6e-94 343.6
Cre08g0548 . 207 436 Core Cell Cycle Gene Families AT5G11300 55.7 2.0e-68 256.9
Cre05g2222 . 124 340 Core Cell Cycle Gene Families AT5G11300 55.3 8.1e-62 235.0
Cre08g1567 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 3.4e-60 229.6
Cre02g1013 . 119 285 Core Cell Cycle Gene Families AT5G11300 52.4 2.2e-43 173.7
Cre09g0228 . 189 503 Core Cell Cycle Gene Families AT1G15570 65.0 3.0e-118 422.5
Cre08g0548 . 188 495 Core Cell Cycle Gene Families AT1G15570 52.1 2.2e-81 300.1
Cre02g1013 . 119 347 Core Cell Cycle Gene Families AT1G15570 51.3 9.1e-59 224.9
Cre09g0228 . 4 503 Core Cell Cycle Gene Families AT1G80370 51.4 4.7e-119 425.2
Cre08g0548 . 217 496 Core Cell Cycle Gene Families AT1G80370 55.7 1.0e-81 301.2
Cre05g2222 . 124 401 Core Cell Cycle Gene Families AT1G80370 51.4 9.9e-77 284.6
Cre08g1567 . 92 370 Core Cell Cycle Gene Families AT1G80370 52.0 2.4e-75 280.0
Cre02g1013 . 119 348 Core Cell Cycle Gene Families AT1G80370 51.9 3.5e-58 223.0
Cre08g1567 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.5 9.1e-115 410.6
Cre05g2222 . 30 406 Core Cell Cycle Gene Families AT5G43080 57.3 2.2e-113 406.0
Cre08g0548 . 218 498 Core Cell Cycle Gene Families AT5G43080 51.2 1.6e-79 293.5
Cre05g1879 . 208 477 Core Cell Cycle Gene Families AT5G43080 53.3 2.3e-78 289.7
Cre09g0228 . 226 503 Core Cell Cycle Gene Families AT5G43080 51.3 6.4e-76 281.6
Cre08g1567 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.4 6.7e-124 441.0
Cre05g2222 . 30 406 Core Cell Cycle Gene Families AT1G47210 54.8 3.7e-114 408.7
Cre09g0228 . 226 498 Core Cell Cycle Gene Families AT1G47210 51.8 8.0e-77 284.6
Cre05g1879 . 208 477 Core Cell Cycle Gene Families AT1G47210 51.8 5.2e-76 282.0
Cre08g1231 . 302 568 Core Cell Cycle Gene Families AT1G47210 50.2 7.2e-70 261.5
Cre05g2222 . 124 404 Core Cell Cycle Gene Families AT1G47220 59.1 1.3e-94 343.6
Cre08g1567 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.9 7.0e-93 337.8
Cre05g1879 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.3 2.6e-71 266.2
Cre05g2222 . 30 406 Core Cell Cycle Gene Families AT1G47230 57.1 1.8e-116 416.4
Cre08g1567 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.4 5.6e-115 411.4
Cre02g1013 . 66 351 Core Cell Cycle Gene Families AT1G47230 53.8 9.4e-78 287.7
Cre08g0548 . 219 500 Core Cell Cycle Gene Families AT1G47230 50.5 1.0e-76 284.3
Cre09g0228 . 228 498 Core Cell Cycle Gene Families AT1G47230 52.0 1.4e-73 273.9
Cre05g1879 . 209 474 Core Cell Cycle Gene Families AT1G47230 51.7 1.0e-71 267.7
Cre04g0641 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 1.0e-115 414.1
Cre04g0641 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.6 7.5e-82 301.2
Cre02g2568 . 102 304 Core Cell Cycle Gene Families AT5G06150 63.2 5.4e-64 241.9
Cre04g1707 . 170 344 Core Cell Cycle Gene Families AT5G06150 54.3 1.1e-45 181.0
Cre04g0641 . 6 406 Core Cell Cycle Gene Families AT3G11520 57.6 4.2e-105 378.6
Cre04g1707 . 171 397 Core Cell Cycle Gene Families AT3G11520 52.4 7.5e-62 235.0
Cre02g2568 . 14 411 Core Cell Cycle Gene Families AT2G26760 52.5 1.6e-107 386.7
Cre04g1707 . 8 440 Core Cell Cycle Gene Families AT2G17620 60.0 5.1e-128 454.9
Cre11g2261 . 153 552 Core Cell Cycle Gene Families AT2G17620 52.2 2.1e-105 379.8
Cre04g1707 . 24 397 Core Cell Cycle Gene Families AT4G35620 58.7 2.3e-103 372.9
Cre11g2261 . 146 509 Core Cell Cycle Gene Families AT4G35620 53.4 6.5e-90 328.2
Cre02g2568 . 137 363 Core Cell Cycle Gene Families AT4G35620 50.9 4.4e-54 209.1
Cre11g2261 . 117 552 Core Cell Cycle Gene Families AT1G20610 63.1 9.7e-143 503.8
Cre04g1707 . 1 440 Core Cell Cycle Gene Families AT1G20610 57.0 1.5e-122 436.8
Cre11g2261 . 117 449 Core Cell Cycle Gene Families AT1G76310 63.5 1.2e-103 373.6
Cre04g1707 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.5 5.8e-82 301.6
Cre02g2568 . 133 300 Core Cell Cycle Gene Families AT1G76310 52.4 6.4e-41 165.2
Cre01g0408 . 12 329 Core Cell Cycle Gene Families AT1G70210 65.3 1.0e-110 397.1
Cre05g2672 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.0 3.1e-104 375.6
Cre04g1465 . 41 335 Core Cell Cycle Gene Families AT2G22490 54.6 1.2e-82 303.9
Cre05g1199 . 57 339 Core Cell Cycle Gene Families AT4G34160 55.6 8.6e-79 291.2
Cre08g1559 . 47 322 Core Cell Cycle Gene Families AT4G34160 50.5 4.9e-66 248.8
Cre02g0981 . 59 292 Core Cell Cycle Gene Families AT4G34160 52.6 2.8e-61 233.0
Cre05g2211 . 71 318 Core Cell Cycle Gene Families AT5G67260 51.4 2.2e-64 243.4
Cre04g1465 . 56 275 Core Cell Cycle Gene Families AT5G65420 60.3 1.2e-69 260.4
Cre08g1092 . 98 297 Core Cell Cycle Gene Families AT5G65420 55.9 1.3e-60 230.3
Cre04g1465 . 54 233 Core Cell Cycle Gene Families AT5G10440 59.1 8.0e-56 214.2
Cre08g1092 . 93 271 Core Cell Cycle Gene Families AT5G10440 54.1 1.3e-50 196.8
Cre04g1278 . 90 358 Core Cell Cycle Gene Families AT5G27620 63.6 3.2e-92 335.5
Cre01g1204 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 8.0e-44 172.9
Cre02g2473 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.2e-42 169.1
Cre01g1204 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.5e-39 158.7
Cre02g2473 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 4.3e-39 157.1
Cre05g2865 . 684 1702 Core Cell Cycle Gene Families AT3G12280 72.0 0.0e+00 1416.0
Cre09g0578 . 2 486 Core Cell Cycle Gene Families AT1G02970 60.1 3.5e-160 562.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007745 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64528 PF00069 Pkinase 6.00E-32 CL0016 Cre PK