Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0724 ATGGGGGAAGAAGATTCCGTGGGTGCGTCTCAGAAAAAGGCTCAATCAGATGGTGCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGTGCCTCGCATCCTCAATCTCATTCAAACTCGCATTCACAGTCACAGGCTCCATTAGTTGCGCAGAATCTTCCGCAAGCTCAGCCAAAGCCACAGACGCAGACGCAGATGGTGGCGGCGGCGATCGCACCTTTGGCTCCTCATTCGTCAGTAAGAGCTGTGAAACCGGAATCACCAATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACACTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATATTGTGATGGTTGCAACTGCATCAATTGTTATAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCCAAAATTGCCAGCAGCCCTCATGGAATGCGGGACAGCAGGGAGGAGGCGGGGGAGTTGCTGATGTTGGGTAAGCACAATAAGGGGTGCCACTGCAAGAAATCGGGTTGTCTAAAAAAGTATTGCGAGTGTTTCCAGGCCAACATTCTCTGTTCGGAAAATTGTAAATGCATGGATTGCAAGAATTTTGAGGGAAGTGAAGAGAGGCAAGCTCTTTTCCATGGAGACCATGGTAACAACATGACATTCATTCAACAGGCAGCTAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGTTATGCTTCACCTCCTGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTTGGACCAACAGCCAAGGACATATCCACCCATAGACCAGTGGCATTTCAACAGGCAAATCATATCAGAGCCACTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGTGTAGGTAGCCCGTCGGTGTTGGGTCCTTCAAAGTTCACGTATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTGTCGAGTGAAGCTGCCAAGACAATTCAAGACCAAACAAGTGCTACAGAAAAGCAATCTGATGGTCAGACTGAAACTTCTGTTGCATCATCCTCTCAAGATAGGTTGCAGAAAAAAGATGCATCTGATGAGAAAGCAGCAGCCGATGATCGTTCTAGTGCAAACCAGGCTGATAAAACCACCCCCGACGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCACCCATGTCTCCCGGAACTTTAGCTTTGATGTGTGATGAGCAAGATACAATGCTAATGGCTGCTGCTTCCCCCAATAGACTAATGGGTCCTGGCTGCAGCACCTCTTCACAACTGCCTCACGGACGAGACACGTCAGAGGTCTATGCAGAGCAGGAGAGGATCGTCCTTACAAAGTTTAGGGATTGTCTTAATAGACTCATCACTTTGGGAGAGATAAAAGAGACACAATGTTCATCTTTAGCCAGAAGTGAAGTAGGTAATCAAGAACAACAATTTAACAATGGCACTACAAATTCTAGAACTGAAACTCAAAGTAATTTGGGCCAACTCAACAATAAAGTTACGAAATCTTCAATTACACCGTCAGTGAAGACATCGCAGACGGTGACAACCCCAGCAGTTATGACCCTTAGTAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1779 46.09 MGEEDSVGASQKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSNSHSQSQAPLVAQNLPQAQPKPQTQTQMVAAAIAPLAPHSSVRAVKPESPMSRARPAVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDSREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMTFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDISTHRPVAFQQANHIRATAPPLPSFPIAGVGSPSVLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTIQDQTSATEKQSDGQTETSVASSSQDRLQKKDASDEKAAADDRSSANQADKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMAAASPNRLMGPGCSTSSQLPHGRDTSEVYAEQERIVLTKFRDCLNRLITLGEIKETQCSSLARSEVGNQEQQFNNGTTNSRTETQSNLGQLNNKVTKSSITPSVKTSQTVTTPAVMTLSNDQRQKVLPLS 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4368939 4372917 + CrPI670011_11g007240.1 Cre11g0724 512469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0724 592 SMART CXC_2 119 159 IPR033467 -
Cre11g0724 592 SMART CXC_2 204 245 IPR033467 -
Cre11g0724 592 MobiDBLite consensus disorder prediction 94 118 - -
Cre11g0724 592 MobiDBLite consensus disorder prediction 403 419 - -
Cre11g0724 592 MobiDBLite consensus disorder prediction 1 79 - -
Cre11g0724 592 PANTHER TESMIN/TSO1-RELATED 31 520 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cre11g0724 592 MobiDBLite consensus disorder prediction 375 402 - -
Cre11g0724 592 MobiDBLite consensus disorder prediction 375 450 - -
Cre11g0724 592 MobiDBLite consensus disorder prediction 420 434 - -
Cre11g0724 592 MobiDBLite consensus disorder prediction 44 79 - -
Cre11g0724 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 207 241 IPR005172 -
Cre11g0724 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 121 156 IPR005172 -
Cre11g0724 592 ProSiteProfiles CRC domain profile. 120 244 IPR005172 -
Cre11g0724 592 MobiDBLite consensus disorder prediction 9 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1642 Cre-Chr7:31849168 Cre11g0724 Cre-Chr11:4368939 6.80E-14 dispersed
Cre08g1257 Cre-Chr8:25774642 Cre11g0724 Cre-Chr11:4368939 1.30E-26 transposed
Cre11g0724 Cre-Chr11:4368939 Cre06g1688 Cre-Chr6:13797090 6.80E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54649 PF03638 TCR 3.10E-12 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0724 - - - 0.0