Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0754 ATGGCTGCTGCAATTTCTCTTTGCTCTGTTTTTCTTCTTCTTCTTCTGACTCGGTGGGTCGACTCGGAGCCGACTCAGGATCGACAAGCCCTTCTCGATTTCTTCTCTAAAACTCCTCACGCCAATCGGGTTCAATGGAATACTTCTAATTCTGTCTGTAATTGGGTTGGCGTTGAGTGCGATTCGAATCAGTCGTTTGTTTACTCTCTTCGTTTGCCTGGTGTTGGCCTTGTCGGACAGATTCCGGCCAATACAATCGGGAAATTGACTCAGCTCCGAGTTCTCAGTCTCCGTTCCAACCGTCTCTCCGGCGAGATCCCATCGGATTTTTCCAATTTAGTAATGCTGCGGAATCTGTATCTTCAGGATAATGCTTTCTCCGGCGAGTTTCCGTCGAGTTTGACTCGGTTGACTCGGCTTACTCGGCTGGATTTGTCGTCGAACGAATTCTCCGGTCCGATTCCGCCGTCTGTTGACAATCTGACTCACTTGAGTGGGATTTTCTTGCAGAACAATGGGTTCTCCGGTTCACTCCCGAGTATCTCAGCCGTTAATTTAACAAACTTCAATGTCTCTAACAACAAACTCAACGGTTCGATTCCGAATTCGTTGGCGAAATTCCCCACCTCCTCCTTCGCCGGGAACTTAGATCTCTGCGGCGGACCATTCCCACCCTGCAACCCATTCACTCCCTCTCCATCTCCGTCACAAAACCCTTCACCAGCCCACAAAAAATCGAAGAAACTCTCCACGGCGGCGATAATCGGAATCATAATCGGTGCCGTTTTCGCAGCTTTTCTTCTCCTCCTCTTCCTCATCCTCTGCATTCGGCGGCGGTCCCGCGGACAACAGACGAAGTCAGCGAAGCCACCATCGGCGGTGGGAACGGCGGCTCGATCAATTCCAGTAGCAGAGGCCGGAACGTCGTCGTCGAAAGACGACATTACCGGAGGATCAGTGGAGGCGACGGAGAGGAACAAGCTGGTGTTCTTCGAAGGAGGGATTTACAACTTCGATTTGGAGGATTTGTTGAGAGCTTCGGCGGAGGTATTGGGGAAAGGAAGCGTGGGAACGTCGTACAAGGCGGTACTAGAAGAAGGGACGACGGTGGTGGTGAAGCGGCTGAAGGATGTGGTGGTGACGAAGAAAGAATTCGAAACTCAAATGGAAATTTTAGGGAAAATTAAACATGAAAATGTGGTTCCTCTCAGAGCATTTTACTTCTCCAAAGATGAAAAACTGCTTGTTTATGATTACATCTCCACCGGAAGTTTGTCGGCCAGCCTTCACGGAAGCAGAGGCTCCGGCAGGACGCCGTTGGACTGGGATTCAAGAATGAGAATAGCTCTAAGCGCCGGCAGGGGATTAGCGCATCTCCACCTCGCCGGCAAGGTGGTTCACGGCAACATTAAATCCTCCAACATCCTTCTCCGCCCCGATCACGACGCCTGCATCTCCGATTTCGGCCTAAACCCACTCTTCGGCACCGCCACGCCGCCGAATCGCGTCGCCGGCTACCGGGCGCCGGAGGTCGTCGAAACCCGAAAAGTCACATTCAAATCCGACGTTTACAGCTACGGCGTTCTCCTCCTTGAGCTCCTGACCGGGAAAGCCCCCAACCAGCAATCCCTCGGCGAGGAGGGAATCGACCTTCCCCGGTGGGTCCAGTCCGTCGTCCGGGAGGAATGGACGGCGGAGGTTTTCGACGCGGAGCTGATGCGGTTCCATAACATTGAAGAAGAGATGGTTCAATTACTGCAGATCGCAATGTCCTGCGTTTCGACGGTTCCCGATCAGCGGCCGGCCATGCCGGAAGTTGTACGGATGATCGAAGATATGAACAGTCATAGAAGTGAGACCGATGACGGGTTGCGCCAGTCTTCCGATGACCCTTCGAAAGGATCGGATGTGAACACGCCGCCGGCGGAATCTAGAACTCCGCCGAGAGTGACGCCGTAG 1959 52.99 MAAAISLCSVFLLLLLTRWVDSEPTQDRQALLDFFSKTPHANRVQWNTSNSVCNWVGVECDSNQSFVYSLRLPGVGLVGQIPANTIGKLTQLRVLSLRSNRLSGEIPSDFSNLVMLRNLYLQDNAFSGEFPSSLTRLTRLTRLDLSSNEFSGPIPPSVDNLTHLSGIFLQNNGFSGSLPSISAVNLTNFNVSNNKLNGSIPNSLAKFPTSSFAGNLDLCGGPFPPCNPFTPSPSPSQNPSPAHKKSKKLSTAAIIGIIIGAVFAAFLLLLFLILCIRRRSRGQQTKSAKPPSAVGTAARSIPVAEAGTSSSKDDITGGSVEATERNKLVFFEGGIYNFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFETQMEILGKIKHENVVPLRAFYFSKDEKLLVYDYISTGSLSASLHGSRGSGRTPLDWDSRMRIALSAGRGLAHLHLAGKVVHGNIKSSNILLRPDHDACISDFGLNPLFGTATPPNRVAGYRAPEVVETRKVTFKSDVYSYGVLLLELLTGKAPNQQSLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMSCVSTVPDQRPAMPEVVRMIEDMNSHRSETDDGLRQSSDDPSKGSDVNTPPAESRTPPRVTP 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4739809 4744624 + CrPI670011_11g007540.1 Cre11g0754 512499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0754 652 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Cre11g0754 652 Pfam Protein kinase domain 349 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0754 652 MobiDBLite consensus disorder prediction 303 317 - -
Cre11g0754 652 MobiDBLite consensus disorder prediction 613 652 - -
Cre11g0754 652 FunFam Probable inactive receptor kinase RLK902 24 182 - -
Cre11g0754 652 Pfam Leucine Rich Repeat 185 206 IPR001611 GO:0005515(InterPro)
Cre11g0754 652 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515(InterPro)
Cre11g0754 652 ProSiteProfiles Protein kinase domain profile. 345 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0754 652 FunFam pollen receptor-like kinase 1 315 419 - -
Cre11g0754 652 MobiDBLite consensus disorder prediction 284 318 - -
Cre11g0754 652 Gene3D Transferase(Phosphotransferase) domain 1 420 633 - -
Cre11g0754 652 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Cre11g0754 652 MobiDBLite consensus disorder prediction 630 644 - -
Cre11g0754 652 Gene3D Phosphorylase Kinase; domain 1 313 419 - -
Cre11g0754 652 CDD STKc_IRAK 351 613 - -
Cre11g0754 652 SUPERFAMILY L domain-like 25 207 - -
Cre11g0754 652 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 420 624 - -
Cre11g0754 652 Pfam Leucine rich repeat 78 125 IPR001611 GO:0005515(InterPro)
Cre11g0754 652 SUPERFAMILY Protein kinase-like (PK-like) 349 610 IPR011009 -
Cre11g0754 652 MobiDBLite consensus disorder prediction 613 629 - -
Cre11g0754 652 Gene3D Ribonuclease Inhibitor 186 226 IPR032675 -
Cre11g0754 652 PANTHER OS05G0588300 PROTEIN 7 618 IPR050994 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1386 Cre-Chr1:27109836 Cre11g0754 Cre-Chr11:4739809 2.90E-130 dispersed
Cre07g0859 Cre-Chr7:7200814 Cre11g0754 Cre-Chr11:4739809 1.30E-69 dispersed
Cre07g1071 Cre-Chr7:16049468 Cre11g0754 Cre-Chr11:4739809 4.00E-78 dispersed
Cre09g1674 Cre-Chr9:34483421 Cre11g0754 Cre-Chr11:4739809 6.50E-103 dispersed
Cre09g2442 Cre-Chr9:43779032 Cre11g0754 Cre-Chr11:4739809 1.20E-115 dispersed
Cre10g1085 Cre-Chr10:21463184 Cre11g0754 Cre-Chr11:4739809 5.30E-73 dispersed
Cre10g2345 Cre-Chr10:37620307 Cre11g0754 Cre-Chr11:4739809 1.70E-74 dispersed
Cre11g0631 Cre-Chr11:3497722 Cre11g0754 Cre-Chr11:4739809 1.10E-67 dispersed
Cre11g0754 Cre-Chr11:4739809 Cre11g1216 Cre-Chr11:10204964 5.50E-49 dispersed
Cre01g0573 Cre-Chr1:5030152 Cre11g0754 Cre-Chr11:4739809 9.90E-64 transposed
Cre02g2205 Cre-Chr2:35711982 Cre11g0754 Cre-Chr11:4739809 3.00E-140 transposed
Cre05g1485 Cre-Chr5:19184659 Cre11g0754 Cre-Chr11:4739809 3.70E-19 transposed
Cre10g2058 Cre-Chr10:35281270 Cre11g0754 Cre-Chr11:4739809 2.70E-94 transposed
Cre11g0754 Cre-Chr11:4739809 Cre06g1905 Cre-Chr6:25845233 4.60E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64530 PF00069 Pkinase 4.80E-37 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0754 - - - 0.0