Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g0788 | ATGGTGACATCAAAGAAGTTTAGAGGTGTTAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCACCCGCTTCTGAAGAGAAGGGTTTGGTTGGGGACATTTGAGACGGCGGAGGAAGCAGCGAGAGCCTACGACCAGGCCGCCGTGTTAATGAGCGGCCGGAACGCAAAAACCAACTTCCCGATGAGCCAAACGGCTGCGCCGGAATTAGAAAAACCCGACAATAATAATAATATCACTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTTCGAAAATGCAGCAAGGCACCGTCGCCGTCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAGAAACGCGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTCGGAAAAACCAACTCCACCTCCGCCACCTCCGCCGCCGCCGGAGCCGCATCCGCATCCAGCGGCGACGACGACGGTGGGCAGTTGAGGAAGAATAAAAAAAGTGGGTGTTTTTCCGGTTTGATCTCGTCGGAAGGTGGTGCCGGTGCATTAATGGCGGCGAGTGGGACCCACATGAAGAACTTGGAGATGGATGAAGAAGAAGAAAGAATTGCATTGCAAATGATTGAAGAGTTGCTGAGCAGAAATTATGGTAACCCATCTGAAATTATTCAAGTTCAAGATCATGATCAAGGGGAAGCATCCTTTCTACCCTCTCTAATTTAA | 741 | 51.28 | MVTSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAAPELEKPDNNNNITSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSTSATSAAAGAASASSGDDDGGQLRKNKKSGCFSGLISSEGGAGALMAASGTHMKNLEMDEEEERIALQMIEELLSRNYGNPSEIIQVQDHDQGEASFLPSLI | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5085775 | 5087236 | - | CrPI670011_11g007880.1 | Cre11g0788 | 512533 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g0788 | 246 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g0788 | 246 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g0788 | 246 | Coils | Coil | 197 | 217 | - | - | |
Cre11g0788 | 246 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g0788 | 246 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g0788 | 246 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g0788 | 246 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g0788 | 246 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - | |
Cre11g0788 | 246 | Pfam | AP2 domain | 6 | 50 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g0788 | 246 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 137 | IPR050913 | - | |
Cre11g0788 | 246 | MobiDBLite | consensus disorder prediction | 144 | 168 | - | - | |
Cre11g0788 | 246 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g1303 | Cre-Chr8:26112391 | Cre11g0788 | Cre-Chr11:5085775 | 7.70E-25 | dispersed | |
Cre09g0305 | Cre-Chr9:2974566 | Cre11g0788 | Cre-Chr11:5085775 | 6.90E-24 | dispersed | |
Cre11g0788 | Cre-Chr11:5085775 | Cre01g0389 | Cre-Chr1:3268466 | 8.00E-17 | dispersed | |
Cre11g0788 | Cre-Chr11:5085775 | Cre05g1858 | Cre-Chr5:30739769 | 6.30E-54 | wgd | |
Cre11g0788 | Cre-Chr11:5085775 | Cre05g0269 | Cre-Chr5:2521414 | 6.30E-14 | wgd | |
Cre11g0788 | Cre-Chr11:5085775 | Cre06g1979 | Cre-Chr6:27189274 | 3.40E-60 | wgd | |
Cre11g0788 | Cre-Chr11:5085775 | Cre07g1627 | Cre-Chr7:31748616 | 4.80E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54655 | PF00847 | AP2 | 3.60E-12 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g0788 | - | - | - | 0.0 |