Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0788 ATGGTGACATCAAAGAAGTTTAGAGGTGTTAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCACCCGCTTCTGAAGAGAAGGGTTTGGTTGGGGACATTTGAGACGGCGGAGGAAGCAGCGAGAGCCTACGACCAGGCCGCCGTGTTAATGAGCGGCCGGAACGCAAAAACCAACTTCCCGATGAGCCAAACGGCTGCGCCGGAATTAGAAAAACCCGACAATAATAATAATATCACTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTTCGAAAATGCAGCAAGGCACCGTCGCCGTCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAGAAACGCGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTCGGAAAAACCAACTCCACCTCCGCCACCTCCGCCGCCGCCGGAGCCGCATCCGCATCCAGCGGCGACGACGACGGTGGGCAGTTGAGGAAGAATAAAAAAAGTGGGTGTTTTTCCGGTTTGATCTCGTCGGAAGGTGGTGCCGGTGCATTAATGGCGGCGAGTGGGACCCACATGAAGAACTTGGAGATGGATGAAGAAGAAGAAAGAATTGCATTGCAAATGATTGAAGAGTTGCTGAGCAGAAATTATGGTAACCCATCTGAAATTATTCAAGTTCAAGATCATGATCAAGGGGAAGCATCCTTTCTACCCTCTCTAATTTAA 741 51.28 MVTSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAAPELEKPDNNNNITSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSTSATSAAAGAASASSGDDDGGQLRKNKKSGCFSGLISSEGGAGALMAASGTHMKNLEMDEEEERIALQMIEELLSRNYGNPSEIIQVQDHDQGEASFLPSLI 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5085775 5087236 - CrPI670011_11g007880.1 Cre11g0788 512533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0788 246 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g0788 246 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g0788 246 Coils Coil 197 217 - -
Cre11g0788 246 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g0788 246 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g0788 246 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g0788 246 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g0788 246 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cre11g0788 246 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g0788 246 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 137 IPR050913 -
Cre11g0788 246 MobiDBLite consensus disorder prediction 144 168 - -
Cre11g0788 246 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1303 Cre-Chr8:26112391 Cre11g0788 Cre-Chr11:5085775 7.70E-25 dispersed
Cre09g0305 Cre-Chr9:2974566 Cre11g0788 Cre-Chr11:5085775 6.90E-24 dispersed
Cre11g0788 Cre-Chr11:5085775 Cre01g0389 Cre-Chr1:3268466 8.00E-17 dispersed
Cre11g0788 Cre-Chr11:5085775 Cre05g1858 Cre-Chr5:30739769 6.30E-54 wgd
Cre11g0788 Cre-Chr11:5085775 Cre05g0269 Cre-Chr5:2521414 6.30E-14 wgd
Cre11g0788 Cre-Chr11:5085775 Cre06g1979 Cre-Chr6:27189274 3.40E-60 wgd
Cre11g0788 Cre-Chr11:5085775 Cre07g1627 Cre-Chr7:31748616 4.80E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54655 PF00847 AP2 3.60E-12 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0788 - - - 0.0