Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0793 ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCATTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTATAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 579 43.01 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSITDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVPGLHY 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5151634 5155240 - CrPI670011_11g007930.1 Cre11g0793 512538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0793 192 CDD HMG-box_SF 120 156 - -
Cre11g0793 192 Gene3D High mobility group box domain 105 161 IPR036910 -
Cre11g0793 192 Pfam YABBY protein 8 166 IPR006780 GO:0007275(InterPro)
Cre11g0793 192 PANTHER PROTEIN YABBY 6-RELATED 8 177 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cre11g0793 192 FunFam axial regulator YABBY 5-like 104 162 - -
Cre11g0793 192 SUPERFAMILY HMG-box 109 159 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0793 K25796 - - csv:101219877 385.571
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1731 Cre-Chr8:29543392 Cre11g0793 Cre-Chr11:5151634 6.70E-19 dispersed
Cre09g2142 Cre-Chr9:40436043 Cre11g0793 Cre-Chr11:5151634 2.70E-41 dispersed
Cre10g0542 Cre-Chr10:4934869 Cre11g0793 Cre-Chr11:5151634 6.60E-38 dispersed
Cre02g2560 Cre-Chr2:38856095 Cre11g0793 Cre-Chr11:5151634 2.10E-48 transposed
Cre05g2533 Cre-Chr5:36647795 Cre11g0793 Cre-Chr11:5151634 1.20E-30 transposed
Cre05g2549 Cre-Chr5:36767805 Cre11g0793 Cre-Chr11:5151634 1.20E-30 transposed
Cre11g0793 Cre-Chr11:5151634 Cre06g1989 Cre-Chr6:27349901 2.60E-71 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g2533 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 2.1e-46 182.6
Cre05g2549 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 2.1e-46 182.6
Cre09g2142 . 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.0 6.3e-42 167.5
Cre02g2560 . 1 174 C2C2-YABBY Transcription Factor Family AT1G08465 65.9 1.2e-54 209.9
Cre09g2142 . 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.3e-43 173.3
Cre06g1989 . 6 180 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 2.4e-42 169.1
Cre11g0793 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 1.3e-40 163.3
Cre10g0542 . 26 194 C2C2-YABBY Transcription Factor Family AT1G08465 52.1 3.3e-39 158.7
Cre09g2142 . 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.9 1.2e-50 196.8
Cre10g0542 . 35 194 C2C2-YABBY Transcription Factor Family AT4G00180 54.3 3.5e-37 152.1
Cre05g2709 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.2 3.6e-39 159.1
Cre06g1989 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 71.0 1.1e-62 236.5
Cre11g0793 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 1.0e-60 229.9
Cre02g2560 . 1 174 C2C2-YABBY Transcription Factor Family AT2G26580 59.2 1.2e-48 189.9
Cre09g2142 . 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.7e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54656 PF04690 YABBY 1.20E-70 CL0114 Cre TF