Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre11g0814 | ATGGAACCTGCCGATTCCACCAATGGCGATGAAGAATCCATTATTACTCCCTTGCTTGCTCAGAAATCATTTGCCAATTCTTCCTCACAGGTCGCTATTGTTGGGGCTAATGTCTGCCCCATTGAGAGCCTTGACTACGAGATTTTTGATAATGAGTTCTTCATGCAAGATTGGAGGAGTCGTGAGGATTTCCAGATATTTCAATACTTGGTTATGAAGTGGCTTTCATGCTTCTTGATCGGTTTGATTATGGGTCTTGTTGGATTTTTCAACAACCTGGCGGTGGAGAATATTGCAGGGAAGAAGTTTGTGGTCACTTCGAATATGATGCTTGAGGGCAGGTATGGGATGGCTTTTCTTGTTTTCTCTGTTTCCAATTTAGTTCTCACCCTATTCGCATCTGTCATTACGGCATTGATCTGTCCCCAAGCAGCCGGCTCAGGTATACCAGAAGTAAAGGCTTATCTGAATGGCGTGGATGCACCTGGAATATTATCGCCTCGGACACTGTTAGTGAAGATTGTTGGCAGCATTTCTATTGTGTCATCATCTATGATTGTCGGAAAAGCTGGGCCTATGGTACATACAGGGGCATGTGTTGCATCCTTGGTAGGTCAGGGGGGTTTCAAAATATTTGGCTTGACATGGAGATGGCTATACCATCTCAAGAATGATCGAGATAGGCGGGATCTTGTAACATGTGGAGCCGCTGCTGGAATAGCTGCTGCTTTTCGTGCTCCTGTTGGTGGTGTGTTGTTTGCTTTTGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGCGATCATTTTTCACAACGGCTGTAGTTGCTGTGGTCTTACGCTCACTGATTGACATTTGTTTAAATGGATTATGTGGATTATTTGGTAAAGGGGGACTTATAATATTTGATACCTACTCAGACTCTCCCACATATCACCTCGAAGATCTTCCTCCGGTGCTTGTTCTTGCTTTTATTGGAGGCATACTTGGAAGCTTATATAATTTTCTTTTGAATAAGTTTCTTCGCATTTACAATCTCATACATGAGAAAGGTATTATTTACAAAATTTTACTGGCTTGCTCGGTCTCAATTTTCACATCCTTCCTTCTTTTTGGATTACCATGGTTCGCATCGTGCCAACCTTGCCCATCAAGTGCTCGAGAAATTTGTCCTACGATAGGTCGATCTGGTAACTTCAAGAAGTTTCAGTGTGCTCCTGGTCACTACAATGATCTTGCAAGTCTCATATTTAACACCAATGATGATGCCATAAAAAATCTCTTTAGCAAGGGCACGGACTCTGAGTTTCAGTTATCGTCAATGCTCACATTTTTCGTTACCTGTTTTTCCTTGAGTATTCTCAGTTATGGGACAGTTGCTCCTGTTGGCCTGTTTGTCCCTGTTATTGTGACTGGAGCTTCTTATGGTCGTTTCGTTGGAATGGTTGTCGGTCCGTACACAAACCTCAGCCATGGCTTCTTTGCGATATTAGGCGCTGCTTCATTTCTCGGGGGGTCAATGAGGACTACAGTTTCTCTCTGTGTTATTATGCTTGAATTGACCAATAATTTGTTGTTGTTGCCTTTAATAATGTTGGTTCTCCTTATTTCCAAGACTGTAGCTGATGCTTTCAACAGTAATATATATAACTTGATCATGAAAGCGAAAGGATTTCCTTATCTAGAAGGCCATGTTGAGCCATACATGAGGCAGCTCACTGTTGCTGATGTGTTAACGAGTCCGCTTCAATTATTGCATGGCATTGAGAAGGTTCGTAACGTAGTAAACATTCTCAGAATGACGAGCCATCACGGATTTCCTGTCATTGACGAACCTCCTTTCTCTGAAGTCCCTGTTTTATATGGTCTAATTCTCAGAGCCCATCTTATCATGTTGTTAAAGAAGAAAGCTTTCTTGTCCGTGCCAATACGTGGATCAGAAAGAGAAGATCTCTGTAAGCTATTCTCAGCTAATGATTTTGTAAAGATGGGTTCGGGTGACGTTGAAAGGATTGAAGATGTACGATTGACCGATGAAGAAATGGAGATGTTCATTGATCTACATCCGTTTGCAAATACTTCACCTTGTACCGTCTTGGAGACAATGTCACTCGCAAAGGCTCTCGAAATTTTTCGAGAAACTGGTTTAAGACACATGCTGGTGATACCCAAGGTCCCTGGGAGATCGCCCGTGGTTGGTGTATTGACTCGGCACGACTTCATGCCAGATTACATTCTTAGTTTGCATCCATTGCTAGAGAAGAGCAGATGGAAAAGGAACCACTTCTTGTAG | 2298 | 42.69 | MEPADSTNGDEESIITPLLAQKSFANSSSQVAIVGANVCPIESLDYEIFDNEFFMQDWRSREDFQIFQYLVMKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLEGRYGMAFLVFSVSNLVLTLFASVITALICPQAAGSGIPEVKAYLNGVDAPGILSPRTLLVKIVGSISIVSSSMIVGKAGPMVHTGACVASLVGQGGFKIFGLTWRWLYHLKNDRDRRDLVTCGAAAGIAAAFRAPVGGVLFAFEEMASWWRSALLWRSFFTTAVVAVVLRSLIDICLNGLCGLFGKGGLIIFDTYSDSPTYHLEDLPPVLVLAFIGGILGSLYNFLLNKFLRIYNLIHEKGIIYKILLACSVSIFTSFLLFGLPWFASCQPCPSSAREICPTIGRSGNFKKFQCAPGHYNDLASLIFNTNDDAIKNLFSKGTDSEFQLSSMLTFFVTCFSLSILSYGTVAPVGLFVPVIVTGASYGRFVGMVVGPYTNLSHGFFAILGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLIMLVLLISKTVADAFNSNIYNLIMKAKGFPYLEGHVEPYMRQLTVADVLTSPLQLLHGIEKVRNVVNILRMTSHHGFPVIDEPPFSEVPVLYGLILRAHLIMLLKKKAFLSVPIRGSEREDLCKLFSANDFVKMGSGDVERIEDVRLTDEEMEMFIDLHPFANTSPCTVLETMSLAKALEIFRETGLRHMLVIPKVPGRSPVVGVLTRHDFMPDYILSLHPLLEKSRWKRNHFL | 765 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 5402690 | 5408565 | - | CrPI670011_11g008140.1 | Cre11g0814 | 512559 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre11g0814 | 765 | PRINTS | Plant CLC chloride channel signature | 290 | 297 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cre11g0814 | 765 | PRINTS | Plant CLC chloride channel signature | 258 | 266 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cre11g0814 | 765 | PRINTS | Plant CLC chloride channel signature | 414 | 430 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cre11g0814 | 765 | PRINTS | Plant CLC chloride channel signature | 47 | 55 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cre11g0814 | 765 | PRINTS | Plant CLC chloride channel signature | 272 | 282 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cre11g0814 | 765 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 26 | 744 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Cre11g0814 | 765 | ProSiteProfiles | CBS domain profile. | 693 | 753 | IPR000644 | - | |
| Cre11g0814 | 765 | Pfam | CBS domain | 695 | 743 | IPR000644 | - | |
| Cre11g0814 | 765 | Pfam | Voltage gated chloride channel | 130 | 544 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre11g0814 | 765 | Gene3D | Clc chloride channel | 65 | 563 | - | - | |
| Cre11g0814 | 765 | SMART | cbs_1 | 583 | 636 | IPR000644 | - | |
| Cre11g0814 | 765 | SMART | cbs_1 | 696 | 749 | IPR000644 | - | |
| Cre11g0814 | 765 | FunFam | Chloride channel ClC3 | 65 | 384 | - | - | |
| Cre11g0814 | 765 | Gene3D | - | 564 | 744 | IPR046342 | - | |
| Cre11g0814 | 765 | SUPERFAMILY | CBS-domain pair | 566 | 743 | IPR046342 | - | |
| Cre11g0814 | 765 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 575 | 745 | - | - | |
| Cre11g0814 | 765 | PRINTS | Chloride channel signature | 494 | 510 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre11g0814 | 765 | PRINTS | Chloride channel signature | 142 | 159 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre11g0814 | 765 | PRINTS | Chloride channel signature | 462 | 482 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre11g0814 | 765 | PRINTS | Chloride channel signature | 173 | 192 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre11g0814 | 765 | PRINTS | Chloride channel signature | 237 | 256 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre11g0814 | 765 | PRINTS | Chloride channel signature | 550 | 564 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre11g0814 | 765 | PRINTS | Chloride channel signature | 512 | 531 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre11g0814 | 765 | SUPERFAMILY | Clc chloride channel | 51 | 565 | IPR014743 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre10g0973 | Cre-Chr10:13521092 | Cre11g0814 | Cre-Chr11:5402690 | 1.20E-263 | dispersed | |
| Cre11g0814 | Cre-Chr11:5402690 | Cre11g1185 | Cre-Chr11:9652984 | 1.00E-219 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre11g0814 | K05016 | - | csv:101216071 | 1391.33 |