Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0834 ATGCTGGGCGCGTTGGGACACGCGCCTTTCATCTATTTTCTCTCTGCTTTTCCTCCTCCCTCCTCTGTTCCAAATCCCAACCTTCCTCGCTTCTCTCTAATGGCTATCTCTTCTCGAATTGCCGTCGTCGGCGACGTCCATGGGCATTGGGATTTACGAGAAGATTCCAAGGGACTTCAACTATTGCAGCCAGATTTAGTGCTCTTTACAGGTGACTTTGGCGAAGAGAATGTTGAACTGGTCCAAAGTATTGCAGATCTTAAATTTGCAAAAGCAGCTATATTGGGAAACCATGATGCTTGGTTTACACCGTGTTTTTCTCACGAGAAAAAGGATGGCGTTCAACTTCAGTTGGAATGTCTTGGCGAGAGTCATATTGGTTACCGACGTATGGACTTTCCTCGGCAAAAACTAAGCATTGTTGGTGGACGACCTTTTTCTCATGGTGGAAAGGGGATGTTTCGGAGACAACTACTTTCTGCAAGATATGGTGTCAAAGACATGAAAACAAGTGCTAAGAGAATATATGAAGCTGCGATAGGCGCACCCGAGGATCATTTGGTTATAATTCTTGCACACAATGGGCCTACAGGTCTTGGTTCTTGTGCAAATGACATTTGTGGAAAAGATTGGGAATTTGGAGGTGGAGACTATGGTGATGAAGATCTAGCACAAGCCATATCTCAGTTGAAAGAGAATGGAAAGTTTCATGTCCCTCCTTTGGTTGTGTTCGGGCATATGCATAAAGAACTCGCATACGGTGGTCATCGTAAAATGATAGTCGTTACAGCTGACAACACCATTTACCTTAATGGAGCTGTCGTTCCGAGGGTTAACAGTTACTCCGGCGAAGAAGGCAAGGTAAAAGGAAACTTCACAAGTACCGGAACCTCGTCTTCGCAATCTGTTTCAAGAGGCACAAAGCGAGCATTCACTGTAGTTGACATTTCAGATAGGAAGGTGGATAAGATTACTGAAAGTTGGATTTCTGTTGTTGGTGATGAGATCTGCTTGGATGAAGCACGTTTGATTTATCAAAGTGGAATTGAAGCAAAAAGGAAAATTTGGTATAATACACAAACCCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAGGAGGAGGAGGAAGGGAGATTGAAATTTAAGCTTTGTTTTTTTGGGCCTTGTTCTTCTTGTGGGTCGTTTGCTTTTTTTATGTTCACCATGACTGTGGAGGTTGGAAGGGCTAATTTGGTGGGTGAAAATGAGGATATGGATCAATTTCCTATTGGTATGCGTATTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGCCAATATCATGTTACAACAACCAATCAGGCGGTTCAGGCACTTAATATGTTGAGGGAGAACAAAAACAGGTTTGACCTGGTTATCAGCGATGTTAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATCATGTTGTCTGCGCATAGCAATACCGAACTTGTAAAGAAGGGAGTTATTCATGGGGCGTGTGACTATTTGCTGAAACCTGTTCGAATTGAAGAATTGAAGAATATATGGCAACATGTCCTTCGGAGAAAGAAGCCTTCTGCTAAGAACCAAAATAAGTGCACTAATGGAAATAACACGAGTCAAAGTGTTGAAGGTGCAAAAGGTTTCCCACCTGCAATCAGTACTGATAATGAGAAACCTGGTAAAAGGCAAAAAGACCAGGACGACGACGAGGAAGGAGGTGAAGAAGACAGTACTTATGAGAATGATGACTCCTCAACCCAAAAAAAGCCAAGGGTAAATTGGTATGACGGAGATGAAAATTTGCACAGGAAGTTTGTGGCAGCTGTTAACTTTTTGGGCTATGAAAAGGCTGTTCCTAAGAAGATACTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAATGTGGCCAGCCATCTTCAGAAATACAGACAATACCTTAAAAAACTGTGTAGTGAGGAAGCTCAGCAATGTAACGTGATGGGTGCATTTGGAGGTAAACAAACCTCCTTCAGGCCCATGGCTTCACTCAATGGATTTTCAATGACTGGAACAGGAAGGCTCTCAAATGCTACATTCTCGCCGTATCCCTCTCAAGAAATAGTTGGTCAATTAAACTCTACTTCTGGATTGAGTTTACATGGAATTGCTTCCTCTGGAATGTTCCAGTCCCATAAATTGAGTAGCTCATTAAATACCGTTGGGAAATCCCATCCAGCTTTCTTGCTTGCCAACCAACCTCCACACACATTCAATGGTATTTCAATGTCATCGGATCACATCCAGTTGCATCAGGATAAATGCACTCTGTCATTCAAAGAGTCTAATTCGATAAATGATGCCTCAAGTTTTACTGTTTCCACCAGCTTCCCTGATGCTAGAATGGCTGTTGGTAGCTCAAGCACTTATGATTTCGGTTCGAGCCATTTGTTGATGTTACGAGGACAGAAGCAACAGATTCAAGGTGGTGGAGAATTTGGAGGTCAGTCTTCTCTTAAGGTAACTCTAGACAACCCAGAACCGTTGGCAAACGGCACAGGTGTTTCTAATATTTTGGGCCATGGTGAGTCTAACAAAAACTGGCCGGGATCAATCCAGCTGCCCAAGTTTTCATCTAATGTCTCAGTCACTGGAATTTACCCTCCTGCTGGAATGCCTGCTACTTATTTGACAATTTCCTCGGCTCAGCCTGATAACGACAACTTTCCTGTTGGTTTTCCTTCAACAAGTGTGGATTCAAGTTCTCAGCTTGATTTAAGAGGGGACACACAATGCTATGAAGAACTAATTGGTAGTGTTGTTGAAGCCATGAATGGAAGATCAAAACAACAATGGGATGCAGCTAAACAGGATTATTATGGCAACCATAATTCCATTGTGAGAGACTCTCTAGTTTCTGGGAATAGTGTTGTAGATCCCTTGAACCAGATTGCAAATCAGAACAATGCAATCTGTCTAGAAAACATTGGAAGCTCTTCGACTAACCAATTGAATGATGGTGCTCCAACCTTCATTCACGATGGTGCGGAAATATCTGCAATGGACACTTGGATGAACTACGATGGAAAAATTCTCATGGATCACACGAAGCTACAAAGTGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTTAATGCTCTGTCAAAACAGGATCAAGATCAATCCATTCAAATAAATGACGAATTTGGATTTGATGCCCAATCTCTCGGATGGATCGTTGGAATTTCATGTAGCTTTATTTCACTGAACCTTGATGGCAATGCGAAAATTTTAGCAGACAGCAAGCTGAAAACTCCCAATATGCAAAAGTGGTAA 3396 42.05 MLGALGHAPFIYFLSAFPPPSSVPNPNLPRFSLMAISSRIAVVGDVHGHWDLREDSKGLQLLQPDLVLFTGDFGEENVELVQSIADLKFAKAAILGNHDAWFTPCFSHEKKDGVQLQLECLGESHIGYRRMDFPRQKLSIVGGRPFSHGGKGMFRRQLLSARYGVKDMKTSAKRIYEAAIGAPEDHLVIILAHNGPTGLGSCANDICGKDWEFGGGDYGDEDLAQAISQLKENGKFHVPPLVVFGHMHKELAYGGHRKMIVVTADNTIYLNGAVVPRVNSYSGEEGKVKGNFTSTGTSSSQSVSRGTKRAFTVVDISDRKVDKITESWISVVGDEICLDEARLIYQSGIEAKRKIWYNTQTQKKKKKKKKKKKEEEEEGRLKFKLCFFGPCSSCGSFAFFMFTMTVEVGRANLVGENEDMDQFPIGMRILAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALNMLRENKNRFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSNTELVKKGVIHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKCTNGNNTSQSVEGAKGFPPAISTDNEKPGKRQKDQDDDEEGGEEDSTYENDDSSTQKKPRVNWYDGDENLHRKFVAAVNFLGYEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKLCSEEAQQCNVMGAFGGKQTSFRPMASLNGFSMTGTGRLSNATFSPYPSQEIVGQLNSTSGLSLHGIASSGMFQSHKLSSSLNTVGKSHPAFLLANQPPHTFNGISMSSDHIQLHQDKCTLSFKESNSINDASSFTVSTSFPDARMAVGSSSTYDFGSSHLLMLRGQKQQIQGGGEFGGQSSLKVTLDNPEPLANGTGVSNILGHGESNKNWPGSIQLPKFSSNVSVTGIYPPAGMPATYLTISSAQPDNDNFPVGFPSTSVDSSSQLDLRGDTQCYEELIGSVVEAMNGRSKQQWDAAKQDYYGNHNSIVRDSLVSGNSVVDPLNQIANQNNAICLENIGSSSTNQLNDGAPTFIHDGAEISAMDTWMNYDGKILMDHTKLQSGFANSSFNSLDELVNALSKQDQDQSIQINDEFGFDAQSLGWIVGISCSFISLNLDGNAKILADSKLKTPNMQKW 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5529015 5545334 - CrPI670011_11g008340.1 Cre11g0834 512579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0834 1131 SMART REC_2 427 539 IPR001789 GO:0000160(InterPro)
Cre11g0834 1131 CDD REC_typeB_ARR-like 429 543 - -
Cre11g0834 1131 Coils Coil 357 378 - -
Cre11g0834 1131 MobiDBLite consensus disorder prediction 544 618 - -
Cre11g0834 1131 SUPERFAMILY CheY-like 426 552 IPR011006 -
Cre11g0834 1131 CDD MPP_NostocDevT-like 38 277 IPR027629 -
Cre11g0834 1131 SUPERFAMILY Metallo-dependent phosphatases 39 270 IPR029052 -
Cre11g0834 1131 Pfam Response regulator receiver domain 429 537 IPR001789 GO:0000160(InterPro)
Cre11g0834 1131 NCBIfam TIGR04168 family protein 59 292 IPR027629 -
Cre11g0834 1131 NCBIfam myb-like DNA-binding domain, SHAQKYF class 613 669 IPR006447 GO:0003677(InterPro)
Cre11g0834 1131 Gene3D - 427 577 - -
Cre11g0834 1131 PANTHER CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE SUPERFAMILY PROTEIN 30 348 IPR027629 -
Cre11g0834 1131 MobiDBLite consensus disorder prediction 552 568 - -
Cre11g0834 1131 ProSiteProfiles Response regulatory domain profile. 428 543 IPR001789 GO:0000160(InterPro)
Cre11g0834 1131 FunFam Two-component response regulator 609 675 - -
Cre11g0834 1131 Pfam Calcineurin-like phosphoesterase 39 249 IPR004843 GO:0016787(InterPro)
Cre11g0834 1131 Gene3D - 609 675 - -
Cre11g0834 1131 SUPERFAMILY Homeodomain-like 611 673 IPR009057 -
Cre11g0834 1131 Gene3D - 35 327 IPR029052 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2086 Cre-Chr6:28618326 Cre11g0834 Cre-Chr11:5529015 3.50E-148 dispersed
Cre06g2198 Cre-Chr6:29791254 Cre11g0834 Cre-Chr11:5529015 3.70E-45 dispersed
Cre06g2200 Cre-Chr6:29809250 Cre11g0834 Cre-Chr11:5529015 1.30E-48 dispersed
Cre08g1683 Cre-Chr8:29248526 Cre11g0834 Cre-Chr11:5529015 2.50E-64 dispersed
Cre09g0522 Cre-Chr9:4911764 Cre11g0834 Cre-Chr11:5529015 3.90E-21 dispersed
Cre09g1194 Cre-Chr9:14108136 Cre11g0834 Cre-Chr11:5529015 2.90E-21 dispersed
Cre09g1935 Cre-Chr9:38182481 Cre11g0834 Cre-Chr11:5529015 1.20E-21 dispersed
Cre09g2496 Cre-Chr9:44218898 Cre11g0834 Cre-Chr11:5529015 3.70E-19 dispersed
Cre10g0445 Cre-Chr10:3420046 Cre11g0834 Cre-Chr11:5529015 3.70E-18 dispersed
Cre10g1770 Cre-Chr10:32074803 Cre11g0834 Cre-Chr11:5529015 3.00E-15 dispersed
Cre11g0834 Cre-Chr11:5529015 Cre01g1541 Cre-Chr1:28617391 1.80E-15 dispersed
Cre11g0834 Cre-Chr11:5529015 Cre05g1811 Cre-Chr5:30211195 1.80E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54658 PF00149 Metallophos 1.40E-09 CL0163 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0834 K14491 - csv:101203718 1190.64