Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0842 ATGGTATCAAAAGCCACCACTGTCTTTTTCTTCACAATTTTAATTTTACAATTCCAAAATTCCAAATCTCAACCATGGATCAAAGCTGGCTATTGGCTTTCCACCCTTGATTTCCCTATATCCAACATAAATTCACCTCTTTTTACTCATCTTTTTTGTGGTTTTGCTGAGCTTATAAACTCCACCTCTTATGAACTTCAATTCTCCTCTAATGATCTCAAATATTTTTCTAATTTCACAACCATTGTCAAACAAAGAAACCCATCTCTCTCCACTCTTCTATCCATAGGGGGTGGAAATGCAAATTATTACACAATTTCCTCAATGGTTAGCAATTTCTCTTATAGAAAAGCTTTCATTGACTCCACAATCAAAATTGCAAGATCTTATGGGTTTGATGGGCTTGATTTTTGTTGGGTTTCAGCCAATTCAAGTTCTGACATGTCAAACATGGGGAAACTCTTTCAAGAATGGAGACAAGCTGCAGAAGTAGAAGCAAGAAGCTCAAAAAAACAAGTCTTGATTTTGACATCAGCAGTTCAATACAAGCCAGATTTGGAAAATGGGTCATCTTTTCCAGTGGATTCCATAAGGAATAATTTGAATTGGGTAAATATTTTGGCTTATGATTATTACATGCCAAATTGGGCAAATTTTACAGCTCCTTTTGCAGCTTTATATGATCCAAAATTAGGAGCAAATACAGATAGTGGAATTGGGAAATGGATTGAAAAAGGATTACCGGCTGCTAATATTCTTTTGGCTTTACCATTTTATGGATATGCTTGGAGGCTTAAAAATGTTGAGAATTTTGGTGTTGGGGCAGCAGCAATTGGGGCAGCAATTACTAATGATGGGTCAATTAGTTATAAGAATATAAAGGAATTTATGGAGAGAAATGGGGTTGATGAAGTGAAGTTTAATGGAAGTTATGTGATGAGTTATTGTGTGGTTGGATCTACTTGGATTGCTTTTGATGATGCTGAGGTTGTTAAAATTAAGGTTTCTTATGTTAAACAAAGGAGGTTGCTTGGTTACTTTGTTTGGTTGGTGTCTTATGATGACAATTGGGAGCTCTCTTCTGTTGCAGCAAGAGAGTTTGGCAATGAGAAAGAGAAGAAGGTATCATTGCTGATAATCATCCCAAGTACAATTGGTGCAGCCATATTATTACTACTACTAGGATTTTTGTTGTTTAGAAGACTCAAATCCAAAGGAAGAAGATCAAAATTCAATGTAAACAATCTTGTTGGTGGAGAAGATTTTGGTAGCAATGCACCTGATTTGCAAGTTTTTAGCTTTGATGAGATTGAAAAGGCTACCAATAAGTTTGCTTTCATGAATAAACTTGGACAAGGTGGTTATGGTCCTGTTTATAAGGGTATACTACCAAATGGAAAGGAGATAGCAGTGAAAAGATTGTCAGAAACTTCAGGACAGGGTTTTGAGGAGTTTAAGAATGAAGTTTTGCTCACTGCAAGATTACAACATGTCAATCTTGTGAGAGTTCTTGGATTTTGTGTTGACACTCATCAACATATGTTGGTTTATGAGTACATGCCTAACAAAAGCTTGGACTTCCACCTATTTGGCCCTGGAAGAGGAAATTTGTTGAATTGGGCAAAAAGAGTGGAGATCATTGAAGGGGTAACTCAAGGACTTCTTTACCTACAAGAATACTCAAGATTGACAATAATTCATAGGGATTTGAAGCCTAGCAATATTTTGTTGGATGATGGAATGAAACCGAAAATCTCGGATTTTGGCATGGCTAGAATTTTTGCAAAAGATGAACTTGAAGCAAACACGAGTCGGATTGCGGGAACACATGGTTATATTCCTCCTGAGTATGTGAGAAAAGGACTTTATTCTACAAAATCAGATGTATTTAGTTTCGGAGTTCTTCTTCTTCAAATCATAAGTGGCAAGAAGATTACCAAGTTGTACGGAGTGCATGAACATTTGAACCTTCTAGATTATGCATATGAGCTGTGGAAAGATGGCAAAGGAATGGAGTTTATGGATTCATCACTTGATGATTCTGATTCAACTTGCAAACTCACAAGATGCATGCAAATAGCTTTGCTTTGTGTCCAAGAAAATGCAGATGATAGGCCATCCATGTTGGAAATCTCTTCAATGCTTAAAAATACAACTTCAGACATTAAAGCTCCACAAAGACCTGCTTTCTCTACAAAAGAAATTCAACATGAAACTGATGATCATACCCTTACCATTCAACAAGAAACTTACTCAATTTGTACTCCAACAGTTTCCGAATTTGCAGCTCGATGA 2295 36.43 MVSKATTVFFFTILILQFQNSKSQPWIKAGYWLSTLDFPISNINSPLFTHLFCGFAELINSTSYELQFSSNDLKYFSNFTTIVKQRNPSLSTLLSIGGGNANYYTISSMVSNFSYRKAFIDSTIKIARSYGFDGLDFCWVSANSSSDMSNMGKLFQEWRQAAEVEARSSKKQVLILTSAVQYKPDLENGSSFPVDSIRNNLNWVNILAYDYYMPNWANFTAPFAALYDPKLGANTDSGIGKWIEKGLPAANILLALPFYGYAWRLKNVENFGVGAAAIGAAITNDGSISYKNIKEFMERNGVDEVKFNGSYVMSYCVVGSTWIAFDDAEVVKIKVSYVKQRRLLGYFVWLVSYDDNWELSSVAAREFGNEKEKKVSLLIIIPSTIGAAILLLLLGFLLFRRLKSKGRRSKFNVNNLVGGEDFGSNAPDLQVFSFDEIEKATNKFAFMNKLGQGGYGPVYKGILPNGKEIAVKRLSETSGQGFEEFKNEVLLTARLQHVNLVRVLGFCVDTHQHMLVYEYMPNKSLDFHLFGPGRGNLLNWAKRVEIIEGVTQGLLYLQEYSRLTIIHRDLKPSNILLDDGMKPKISDFGMARIFAKDELEANTSRIAGTHGYIPPEYVRKGLYSTKSDVFSFGVLLLQIISGKKITKLYGVHEHLNLLDYAYELWKDGKGMEFMDSSLDDSDSTCKLTRCMQIALLCVQENADDRPSMLEISSMLKNTTSDIKAPQRPAFSTKEIQHETDDHTLTIQQETYSICTPTVSEFAAR 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5592150 5598057 + CrPI670011_11g008420.1 Cre11g0842 512587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0842 764 Gene3D Glycosidases 41 356 - -
Cre11g0842 764 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 370 IPR001223 GO:0005975(InterPro)
Cre11g0842 764 CDD STKc_IRAK 450 717 - -
Cre11g0842 764 FunFam Class V chitinase CHIT5b 258 325 - -
Cre11g0842 764 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 334 730 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cre11g0842 764 FunFam Uncharacterized protein 520 724 - -
Cre11g0842 764 Gene3D Phosphorylase Kinase; domain 1 420 519 - -
Cre11g0842 764 Pfam Protein tyrosine and serine/threonine kinase 446 714 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g0842 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 565 577 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g0842 764 CDD GH18_plant_chitinase_class_V 24 360 - -
Cre11g0842 764 Pfam Glycosyl hydrolases family 18 30 354 IPR001223 GO:0005975(InterPro)
Cre11g0842 764 SMART 2g34 26 354 IPR011583 GO:0008061(InterPro)
Cre11g0842 764 SUPERFAMILY (Trans)glycosidases 27 370 IPR017853 -
Cre11g0842 764 Gene3D - 258 325 IPR029070 -
Cre11g0842 764 SUPERFAMILY Protein kinase-like (PK-like) 427 740 IPR011009 -
Cre11g0842 764 Gene3D Transferase(Phosphotransferase) domain 1 520 740 - -
Cre11g0842 764 SUPERFAMILY Chitinase insertion domain 259 325 IPR029070 -
Cre11g0842 764 ProSiteProfiles Protein kinase domain profile. 444 730 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0842 764 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 409 519 - -
Cre11g0842 764 SMART serkin_6 444 715 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2083 Cre-Chr6:28588326 Cre11g0842 Cre-Chr11:5592150 2.90E-79 dispersed
Cre10g0828 Cre-Chr10:8941168 Cre11g0842 Cre-Chr11:5592150 6.00E-85 dispersed
Cre10g0829 Cre-Chr10:8956144 Cre11g0842 Cre-Chr11:5592150 2.20E-87 dispersed
Cre11g0840 Cre-Chr11:5573626 Cre11g0842 Cre-Chr11:5592150 2.20E-46 dispersed
Cre11g0842 Cre-Chr11:5592150 Cre09g0200 Cre-Chr9:2138494 8.10E-68 dispersed
Cre11g0841 Cre-Chr11:5581195 Cre11g0842 Cre-Chr11:5592150 4.10E-62 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64533 PF00704 Glyco_hydro_18 9.20E-64 CL0058 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0842 - - - 0.0