Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0843 ATGGCTGATATTTCATTGGAAGATGTTAGAAATGAGAATGTTGACCTGGAGAGGATTCCAATTGAGGAGGTATTTGAGCAACTGAAATGCAACAGAAATGGTTTGTCATCTGAGGAAGGAGAAAAGAGACTTCAAATCTTTGGCCCTAACAAACTTGAAGAGAAAAAAGAGAGCAAATTCCTCAAGTTTTTGGGGTTCATGTGCAACCCCCTCTCATGGGTCATGGAATCTGCTGCTATCATGGCTATTGTCTTGGCCAATGGAGGGGGAAAGCCTCCGGACTGGCAAGATTTTTTTGGAATAGTGGCGTTGCTCATTATCAACTCTACCATCAGTTTTATTGAAGAGAACAATGCAGGTAATGCAGCTGCTGCTCTAATGGCAGGACTTGCTCCAAAAACCAAGGTTTTGAGAGATGGAAAATGGAGTGAGGAAGAGGCAGCTATTTTAGTACCAGGAGATTTAATCAGTATCAAGTTGGGAGATATTGTCCCTGCTGATGCAAGACTCTTGGAAGGCGATCCTCTTAAGATCAATCAATCTGCTCTCACCGGCGAATCCTTACCGGTTACCAAGAACCTGGGCGACGAGGTTTTCTCTGGCTCGACTTGTAAACAAGGAGAAATTGAGGCTATTGTTATTGCCACTGGTGTCCACACCTTCTTTGGCAAGGCAGCTCATCTTGTTGATAGCACTAACCAAGTTGGTCATTTCCAAAAGGTGTTGACAGCCATTGGTAACTTCTGCATTTGCTCCATTGCTCTAGGAATGCTCATTGAAATCATAGTGATGTACCCAATCCAAAATAGGGCATACAGAGAGGGCATTGATAACTTGCTGGTTCTTCTCATCGGTGGCATTCCAATTGCCATGCCGACAGTGTTGTCGGTGACCATGGCTATTGGTTCTCACCGTCTAGCGGAGCAAGGTGCTATTACCAAAAGAATGACAGCCATTGAAGAAATGGCAGGAATGGATGTGCTTTGTAGTGACAAGACTGGGACTCTCACCCTCAACAAGCTGACAGTGGACAAGAGTTTGATTGAAAATATCGACGCAGACACATTACTTCTGCTGGCTGCAAGAGCTTCAAGAGTTGAGAACCAAGATGCTACCGATGCTTCGATCGTCGGGATGTTGGGTGATCCAAAGGAGCGCACTGCTATCACTTACATTGATAGTAATGGAAACTGGCATAGAAGTAGCAAGGGTGCTCCGGAACAGATAATTGACCTTTGTGACCTCAAAGGGGAGATAAGGAAGAAGGCTCATGATATTATCAGTAATTATGCAGATCGTGATCTTCGTTCTCCAGCCGTCGCTCGTCAGACTGTTCTAGAGAAAACCAAAGAGAGTGCTGGAGAGCCATGGGACTTTGTGGGCTTGTTGCCCCTCTTTGATCCTCCAAGGCATGATAGTGCAGAGACTATTCGTCAAGCACTCGAACTCGGGGTAAATGTTAAGATGATCACTGGAGATCAATTGGCCATTGGAAAAGAGACCGGTCGTAGGCTCGGTATGGGCACCAATATGTATCCATCATCTTCCTTACTTGGTCAAAGCAAGGATGAATCCATTGCTAGCATTCCTGTTGATGAACTTATTGAGAAGGCAGATGGGTTTGCTGGTGTCTTCCCAGAGATAGTGAAAAAGCTCCAAGAGAGGAAACACATTTGTGGGATGACTGGTGACGGTGTTAACGATGCCCCTGCGCTCAAGAAGGCCGACATCGGAATTGCTGTAGCTGATGCAACTGATGCAGCAAGGAGTGCATCAGACATTGTTTTAACAGAACCAGGTCTCAGTGTAATCGTGAGTGCAGTTCTAACAAGTAGGGCCATCTTTCAAAGGATGAAAAACTACACAATCTATGCAGTTTCCATCACAATCCGAATCGTGTTGGGTTTCTTGCTTGTAGCTCTGATATGGAAGTTTGACTTCTCACCTTTCATGGTCTTGATTATTGCCATCTTGAATGATGGAACCATCATGACCATCTCCAAGGATAGAGTGAAGCCATCTCCTATGCCTGATTCATGGAAGCTAAACGAAATTTTCGCCACCGGTGTTGTTCTCGGAACGTACATGGCTATCATGACTGTGGTCTTCTTCTGGCTAACATATCAGACTGATTTCTTTCCAAAAACATTTGGGGTGAAGCAAATCAGTGAAAATCTAGCTGAGCTTAACTCTGCTCTTTACCTCCAAGTGAGCATCATTAGCCAAGCCCTCATCTTCGTGACGCGATCAAGGAGTTGGTCCTTTGTAGATCGCCCTGGTGTTTTGCTAGTTGGAGCCTTCCTAATAGCTCAGCTGTTGGCAACCGTCATCGCCGTGTATGCCAAATGGGACTTTGCTAGAATTCATGGCATTGGTTGGGGATGGCCAGGAGTGATCTAG 2400 45.29 MADISLEDVRNENVDLERIPIEEVFEQLKCNRNGLSSEEGEKRLQIFGPNKLEEKKESKFLKFLGFMCNPLSWVMESAAIMAIVLANGGGKPPDWQDFFGIVALLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEEEAAILVPGDLISIKLGDIVPADARLLEGDPLKINQSALTGESLPVTKNLGDEVFSGSTCKQGEIEAIVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIALGMLIEIIVMYPIQNRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIENIDADTLLLLAARASRVENQDATDASIVGMLGDPKERTAITYIDSNGNWHRSSKGAPEQIIDLCDLKGEIRKKAHDIISNYADRDLRSPAVARQTVLEKTKESAGEPWDFVGLLPLFDPPRHDSAETIRQALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASIPVDELIEKADGFAGVFPEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLNEIFATGVVLGTYMAIMTVVFFWLTYQTDFFPKTFGVKQISENLAELNSALYLQVSIISQALIFVTRSRSWSFVDRPGVLLVGAFLIAQLLATVIAVYAKWDFARIHGIGWGWPGVI 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5599319 5603653 + CrPI670011_11g008430.1 Cre11g0843 512588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0843 799 PANTHER CALCIUM-TRANSPORTING ATPASE 17 799 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Cre11g0843 799 Gene3D - 341 466 IPR023299 GO:0000166(InterPro)
Cre11g0843 799 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Cre11g0843 799 Pfam haloacid dehalogenase-like hydrolase 325 576 - -
Cre11g0843 799 Pfam E1-E2 ATPase 131 308 - -
Cre11g0843 799 PRINTS H+-transporting ATPase (proton pump) signature 734 755 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre11g0843 799 PRINTS H+-transporting ATPase (proton pump) signature 593 618 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre11g0843 799 PRINTS H+-transporting ATPase (proton pump) signature 562 578 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre11g0843 799 PRINTS H+-transporting ATPase (proton pump) signature 423 441 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre11g0843 799 Pfam Cation transporter/ATPase, N-terminus 18 81 IPR004014 -
Cre11g0843 799 NCBIfam HAD-IC family P-type ATPase 101 350 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre11g0843 799 NCBIfam HAD-IC family P-type ATPase 547 649 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre11g0843 799 FunFam Plasma membrane ATPase 458 610 - -
Cre11g0843 799 Gene3D - 94 789 - -
Cre11g0843 799 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Cre11g0843 799 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 798 IPR023298 -
Cre11g0843 799 FunFam Plasma membrane ATPase 132 216 - -
Cre11g0843 799 NCBIfam plasma-membrane proton-efflux P-type ATPase 34 780 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cre11g0843 799 Gene3D - 326 599 IPR023214 -
Cre11g0843 799 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Cre11g0843 799 PRINTS P-type cation-transporting ATPase superfamily signature 461 472 - -
Cre11g0843 799 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Cre11g0843 799 PRINTS P-type cation-transporting ATPase superfamily signature 483 493 - -
Cre11g0843 799 PRINTS P-type cation-transporting ATPase superfamily signature 585 597 - -
Cre11g0843 799 PRINTS P-type cation-transporting ATPase superfamily signature 562 581 - -
Cre11g0843 799 Gene3D - 132 216 - -
Cre11g0843 799 FunFam ATPase 4 plasma membrane-type 547 789 - -
Cre11g0843 799 CDD P-type_ATPase_H 34 799 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cre11g0843 799 SUPERFAMILY HAD-like 325 609 IPR036412 -
Cre11g0843 799 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g0843 Cre-Chr11:5599319 Cre11g1583 Cre-Chr11:25790856 2.00E-37 dispersed
Cre11g0843 Cre-Chr11:5599319 Cre11g1632 Cre-Chr11:27210333 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0843 K01535 - csv:101211582 1425.61