Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0855 ATGGGGATTTATTTGCCATTTAGCATTCTTTTTGCCAAGCAAATTTTAAAAGTGCCATCAGGTTTCACCAAAAATCAGTTATACGTCCCAAAAGGTCATGTAGTAGTTTACGTGGGAGAGATACAGAAGAAACGATTTCTGGTTCCGATATCATACTTGAATCACCCTTCATTCCAACAACTGCTTAAATACGCTGAGGAAGAGTTTGGTTTCAAACATCTTCATGGGGGTCTTACAATTCCCTGCAAGGAGGATGCCTTCACTGATCTCACTTCTAGATTGCAACTGCAAGTTTCTTAG 300 39.67 MGIYLPFSILFAKQILKVPSGFTKNQLYVPKGHVVVYVGEIQKKRFLVPISYLNHPSFQQLLKYAEEEFGFKHLHGGLTIPCKEDAFTDLTSRLQLQVS 99
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5721285 5721584 - CrPI670011_11g008550.1 Cre11g0855 512600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0855 99 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 23 94 IPR003676 GO:0009733(InterPro)
Cre11g0855 99 Pfam Auxin responsive protein 24 93 IPR003676 GO:0009733(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0855 K14488 - - csv:116402091 151.369
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g0855 Cre-Chr11:5721285 Cre11g0863 Cre-Chr11:5751667 5.10E-39 dispersed
Cre11g0854 Cre-Chr11:5719796 Cre11g0855 Cre-Chr11:5721285 3.80E-31 tandem
Cre11g0855 Cre-Chr11:5721285 Cre11g0856 Cre-Chr11:5723603 5.30E-36 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00341 Cam11g0381 Cec11g0380 . Clacu11g0502 Cmu11g0361 Cre11g0855 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000045 7 14 1 1 5 16 0 0 13 4 12 13 24 19 19 31 17 1 0 16 18 3 0 3 14 20 13 24 12 19 339