Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre11g0873 | ATGTCACCGGAGACGTCGAAAAGCCACAAGATCCGTCGCATTGTCCGCCTCCGGCAAATGCTACAACACTGGCGCAAGAAGGCACGTGCCGCGGCCAACAGAGCACCGCCAGCCGACGTTCCCGCCGGTCACGTCGCCGTATGCGTCGGTAGCGACTGCCGGCGATTCATCGTCCGCGCCACCTTCCTAAACCATCCGATCTTCCGTAAGTTACTCTCACAGGCCGAAGAAGAATACGGCTTCGAAACGCGAGGGCCTCTGGCTCTTCCGTGCGACGAATCGGTCTTCGAAGAAGTTCTCCGAGTCGTCGCTCGCTCCGAGTTGAGTAACTCATCGCGAAATTCGAATCTCAAGGATTTACAAAGGCGATGCGATGAAGATGTTAGGATTAAGAACCTCGAGTTCTTAGGCGAATCGAGACCTTTACTGTATGGATTTTCTGATAATAAATCCGTTTGTTGA | 462 | 53.68 | MSPETSKSHKIRRIVRLRQMLQHWRKKARAAANRAPPADVPAGHVAVCVGSDCRRFIVRATFLNHPIFRKLLSQAEEEYGFETRGPLALPCDESVFEEVLRVVARSELSNSSRNSNLKDLQRRCDEDVRIKNLEFLGESRPLLYGFSDNKSVC | 153 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 5839461 | 5839922 | - | CrPI670011_11g008730.1 | Cre11g0873 | 512618 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre11g0873 | 153 | Pfam | Auxin responsive protein | 16 | 102 | IPR003676 | GO:0009733(InterPro) | |
| Cre11g0873 | 153 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 17 | 103 | IPR003676 | GO:0009733(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre02g0810 | Cre-Chr2:4872610 | Cre11g0873 | Cre-Chr11:5839461 | 6.60E-46 | dispersed | |
| Cre11g0869 | Cre-Chr11:5790961 | Cre11g0873 | Cre-Chr11:5839461 | 2.10E-08 | proximal | |
| Cre11g0873 | Cre-Chr11:5839461 | Cre05g2018 | Cre-Chr5:32187649 | 4.60E-47 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre11g0873 | K14488 | - | csv:101222974 | 264.233 |