Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0890 ATGAAGATCCGTTGTGATGTTTGCGAGAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCGGCCCTCTGCGCCGCCTGTGACCGCCACGTCCACCGCGCCAACAAGCTCGCCGAGAAACACAACCGTCTCTCTCTCCTCCAATCCACCGCCGCCGCTGCCAATTCACTGCCGTTGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACATCACCAACGATCGAACCCAGAAGCACACCCGGTTTCTTCTCACCGGCGTGAAGGTCTCGCCGTCGCCGTTGGCTTCTTCTACTTCCTCCTCCTCCGTCTCAAGCGGCGGCGAAGAAATTGAAGGCGAAATTGGGTTGTTCAAGAGACGCTCGAGGAAGAGGGCTAAAATAGAGGAATTAGAGAAGCCATTGAATGTTGAAGAAAATGGGGTATCAATAAGCAGTATTTGGGAGTATTTGGAGAGTTTGCCTGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCATCTGCTGCTGATATTTTTCTGTAA 576 52.08 MKIRCDVCEKEEASVFCPSDEAALCAACDRHVHRANKLAEKHNRLSLLQSTAAAANSLPLCDICQVRRAFLFCREDRAILCRECDIPIHITNDRTQKHTRFLLTGVKVSPSPLASSTSSSSVSSGGEEIEGEIGLFKRRSRKRAKIEELEKPLNVEENGVSISSIWEYLESLPGWCVEEFLDSSSAADIFL 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6083189 6083764 - CrPI670011_11g008900.1 Cre11g0890 512635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0890 191 CDD Bbox1_BBX-like 60 103 IPR049808 -
Cre11g0890 191 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cre11g0890 191 Pfam B-box zinc finger 3 47 IPR000315 GO:0008270(InterPro)
Cre11g0890 191 Pfam B-box zinc finger 58 99 IPR000315 GO:0008270(InterPro)
Cre11g0890 191 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 184 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cre11g0890 191 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cre11g0890 191 Gene3D Classic Zinc Finger 1 102 - -
Cre11g0890 191 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cre11g0890 191 SMART bboxneu5 56 103 IPR000315 GO:0008270(InterPro)
Cre11g0890 191 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1378 Cre-Chr7:28687336 Cre11g0890 Cre-Chr11:6083189 1.50E-30 dispersed
Cre09g1473 Cre-Chr9:28915774 Cre11g0890 Cre-Chr11:6083189 2.40E-34 dispersed
Cre11g0890 Cre-Chr11:6083189 Cre02g0833 Cre-Chr2:5117104 4.90E-46 wgd
Cre11g0890 Cre-Chr11:6083189 Cre08g1404 Cre-Chr8:27022092 4.00E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54660 PF00643 zf-B_box 1.60E-06 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0890 - - - 0.0