Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g0890 | ATGAAGATCCGTTGTGATGTTTGCGAGAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCGGCCCTCTGCGCCGCCTGTGACCGCCACGTCCACCGCGCCAACAAGCTCGCCGAGAAACACAACCGTCTCTCTCTCCTCCAATCCACCGCCGCCGCTGCCAATTCACTGCCGTTGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACATCACCAACGATCGAACCCAGAAGCACACCCGGTTTCTTCTCACCGGCGTGAAGGTCTCGCCGTCGCCGTTGGCTTCTTCTACTTCCTCCTCCTCCGTCTCAAGCGGCGGCGAAGAAATTGAAGGCGAAATTGGGTTGTTCAAGAGACGCTCGAGGAAGAGGGCTAAAATAGAGGAATTAGAGAAGCCATTGAATGTTGAAGAAAATGGGGTATCAATAAGCAGTATTTGGGAGTATTTGGAGAGTTTGCCTGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCATCTGCTGCTGATATTTTTCTGTAA | 576 | 52.08 | MKIRCDVCEKEEASVFCPSDEAALCAACDRHVHRANKLAEKHNRLSLLQSTAAAANSLPLCDICQVRRAFLFCREDRAILCRECDIPIHITNDRTQKHTRFLLTGVKVSPSPLASSTSSSSVSSGGEEIEGEIGLFKRRSRKRAKIEELEKPLNVEENGVSISSIWEYLESLPGWCVEEFLDSSSAADIFL | 191 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6083189 | 6083764 | - | CrPI670011_11g008900.1 | Cre11g0890 | 512635 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g0890 | 191 | CDD | Bbox1_BBX-like | 60 | 103 | IPR049808 | - | |
Cre11g0890 | 191 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
Cre11g0890 | 191 | Pfam | B-box zinc finger | 3 | 47 | IPR000315 | GO:0008270(InterPro) | |
Cre11g0890 | 191 | Pfam | B-box zinc finger | 58 | 99 | IPR000315 | GO:0008270(InterPro) | |
Cre11g0890 | 191 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 184 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
Cre11g0890 | 191 | CDD | Bbox1_BBX-like | 5 | 47 | IPR049808 | - | |
Cre11g0890 | 191 | Gene3D | Classic Zinc Finger | 1 | 102 | - | - | |
Cre11g0890 | 191 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
Cre11g0890 | 191 | SMART | bboxneu5 | 56 | 103 | IPR000315 | GO:0008270(InterPro) | |
Cre11g0890 | 191 | ProSiteProfiles | Zinc finger B-box type profile. | 56 | 103 | IPR000315 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre07g1378 | Cre-Chr7:28687336 | Cre11g0890 | Cre-Chr11:6083189 | 1.50E-30 | dispersed | |
Cre09g1473 | Cre-Chr9:28915774 | Cre11g0890 | Cre-Chr11:6083189 | 2.40E-34 | dispersed | |
Cre11g0890 | Cre-Chr11:6083189 | Cre02g0833 | Cre-Chr2:5117104 | 4.90E-46 | wgd | |
Cre11g0890 | Cre-Chr11:6083189 | Cre08g1404 | Cre-Chr8:27022092 | 4.00E-40 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54660 | PF00643 | zf-B_box | 1.60E-06 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g0890 | - | - | - | 0.0 |