Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0897 ATGGCTACTTACTACTCTAGTTCGAATAACGAAAGGGATGCTACTCCCATCCTCTATTCAAGGGGATCTTTGCTCGGTTCGTATGAAGAAACAACAGTTCTTCCACGGAATATGATGATGCATGTAAATTCTGGGACATACATGGATTCATTGCCTTCGCAGGCGCAAAATGGTTGTGGTCAGATAACGTCCGTTGGAGCAGCGGGAACTACCCAACAGCAGCAAGAGTTTTTATCGAATCTTGGTGGTTCGCAAATTGCTGAGCATGATTTCAATACATGGAGAGAGAACCGGAGTGAAATGCTTGGCACGAACTCGATGCGTGGCCCTACCAATGTTCTTCATGGTGGGCATAATTTGCAGGGTCAGGGGTTATCCCTTACTCTCAGTACACAAATCCCATCTGCAATCCAAATCCCTTCAATCCCCTACAGAAATTCGGATATGGGTTTAACTTCATTCCTGAGTCCTAATCCAACTAATTCAGGCGAGGATGGCTGCAGAAATGGCGCTTCCAGAGACGAACAGATGAGAAATGGAGAAAACTTGCCACCTAATTTTCAAGAATTGGCTAAGGGTGAATTATCTCAATACAGCATGTCTAGTATTGCAAGAACTATGCCCAATTCAAAGTACCTCAAGGCAGCTCAACAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAACGAGAGAAACCAGAGTTCACATGAGCATGAAACTAGAAGTGCAAAGAATGGTGATGCAGGAACCAAAAATGACAGTTCGATGCTCACTGCGAGTGGAGCATCTTCAAACCCTCAAGAAACTGGGAGCAATTCAACATGTGAGCTCTCACATGCCGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTATCACCAGATGCAGATTGTGGTGTCATCATTTGATGTGATAGCTGGATGTGGGGCATCTAAACCATATACTGCACTTGCTCTCCAGACTATATCCCGTCATTTTCGGTGCTTGCGGGATGCAATAGCTGGTCAAGTCAGAGCTACCCGTAAAAGCCTAGGAGAGCATGAGAATTCTGGAAATGACAAAGGAGTTGGAATCACTCGTCTCCGATATGTGGACCAGCAGTTAAGGCAACAGAGGGCTCTTCAGCAGCTTGGTATGATTCAGCAGCATGCTTGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCAATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTGGCACGGCAGACAGGATTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCGCGTGTACGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAAATAGGAAGTGTAGACATGGACTCTATATCATCATCTGAAAATGCTGTCAAGGCAACAAAAGGAGATAACAAGACCTTTGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGCAAGCTCAACAGCCACCGAAAGATGTAGCGCTGGAGACATTATCGACTTAAAATCTGATCAAGTCTCTAATCTCGGAAATTCCAGTTCCAACAGACTAGCTAGTTTCCAAAATGGTGCTCACATTGAAGCCCGAATTGAGCTGGTGAAACCGAGTGAGGAGTTAAGGCCTAATGTAAATAACTCTAGTTTCTTTCCTGATGCAATTGTCCACTCTCAGGGTGAGAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCACATGTCTGAATTGGGAAGGTTTGGGACGGTTGGCGGGGTATCGCTTACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGCATGCCTATGCCTGCTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGACGATATGTACAATGCCGCAGGGTCTTCTCTCGGGGAAACGGTGCATTTTGAATGCGTAAATAGTGGGAATCCGCAACCGAGGTTTGGCCCTTCCCATCTTTATCATGATTTTGTTGTGTAA 2046 45.21 MATYYSSSNNERDATPILYSRGSLLGSYEETTVLPRNMMMHVNSGTYMDSLPSQAQNGCGQITSVGAAGTTQQQQEFLSNLGGSQIAEHDFNTWRENRSEMLGTNSMRGPTNVLHGGHNLQGQGLSLTLSTQIPSAIQIPSIPYRNSDMGLTSFLSPNPTNSGEDGCRNGASRDEQMRNGENLPPNFQELAKGELSQYSMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNQSSHEHETRSAKNGDAGTKNDSSMLTASGASSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSVDMDSISSSENAVKATKGDNKTFEDDKEEDLQQSASSTATERCSAGDIIDLKSDQVSNLGNSSSNRLASFQNGAHIEARIELVKPSEELRPNVNNSSFFPDAIVHSQGESDRFMAAAAAYHMSELGRFGTVGGVSLTLGLQHCEGGGMPMPAGTHHGFAAMRGDDMYNAAGSSLGETVHFECVNSGNPQPRFGPSHLYHDFVV 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6157965 6161085 + CrPI670011_11g008970.1 Cre11g0897 512642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0897 681 SUPERFAMILY Homeodomain-like 407 474 IPR009057 -
Cre11g0897 681 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 158 502 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre11g0897 681 MobiDBLite consensus disorder prediction 150 187 - -
Cre11g0897 681 FunFam BEL1-like homeodomain protein 4 409 471 - -
Cre11g0897 681 SMART prehox3 201 356 IPR006563 -
Cre11g0897 681 ProSiteProfiles 'Homeobox' domain profile. 403 466 IPR001356 GO:0003677(InterPro)
Cre11g0897 681 MobiDBLite consensus disorder prediction 150 167 - -
Cre11g0897 681 Pfam Homeobox KN domain 423 462 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre11g0897 681 SMART HOX_1 406 470 IPR001356 GO:0003677(InterPro)
Cre11g0897 681 MobiDBLite consensus disorder prediction 231 285 - -
Cre11g0897 681 Pfam Associated with HOX 208 355 IPR006563 -
Cre11g0897 681 Coils Coil 288 308 - -
Cre11g0897 681 MobiDBLite consensus disorder prediction 253 285 - -
Cre11g0897 681 CDD homeodomain 406 467 IPR001356 GO:0003677(InterPro)
Cre11g0897 681 MobiDBLite consensus disorder prediction 231 252 - -
Cre11g0897 681 Gene3D - 401 479 - -
Cre11g0897 681 MobiDBLite consensus disorder prediction 486 520 - -
Cre11g0897 681 MobiDBLite consensus disorder prediction 495 510 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2551 Cre-Chr2:38742831 Cre11g0897 Cre-Chr11:6157965 1.70E-80 dispersed
Cre08g1638 Cre-Chr8:28886980 Cre11g0897 Cre-Chr11:6157965 3.10E-37 dispersed
Cre09g0262 Cre-Chr9:2685876 Cre11g0897 Cre-Chr11:6157965 1.30E-93 dispersed
Cre09g2275 Cre-Chr9:41969914 Cre11g0897 Cre-Chr11:6157965 1.30E-65 dispersed
Cre10g2260 Cre-Chr10:36943790 Cre11g0897 Cre-Chr11:6157965 4.00E-49 dispersed
Cre11g0897 Cre-Chr11:6157965 Cre10g1946 Cre-Chr10:34169119 2.10E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54661 PF07526 POX 4.00E-51 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0897 - - - 0.0