Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0909 ATGGCGGCTGCAAATCTCTACTCTCCTTCACCTTCCCTTCCCAGCACCCTCAGACACTCTCTTAATTCAAACCCTTTTACCCGTATTCCTTTTCGACTTCACAAACCCTTCTCCAAAACTCCCCTCTCCCTAAAAGCTGTTCTTTCTCAAAACCCCTCTAAAACCCAGACCCAATTTCACCATTGTTTCTCCAAATCCTCAGATGGGTTTCTTTATTGCGAGGGAATTAAGGTGCAGGACATCATGGAATCTGTTGATAAGCGCCCTTTCTATCTTTACAGCAAACCCCAGATAACTAGAAATGTTGAGGCTTATAAAGAGGCTTTGGAAGGGCTGAATTCGATCATTGGTTATGCAATTAAGGCCAATAATAATTTGAAAGTGTTGGAGCATTTGAGGAAGTTGGGTTGTGGAGCTGTGCTTGTTAGTGGAAATGAGCTTCGCTTGGCTCTTCATGCTGGCTTTGACCCCACCAGATGTATTTTTAATGGGAATGGTAAACTTTTGGAGGATTTGGTTCTAGCTGCGGAACAAGGTGTTTTTGTCAATGTGGACAGTGAGTTTGACTTGGACAATATTGTGGCTGCTGCAAGAATCTCTGGAAAGAAAGTCAATGTTTTACTTCGTATTAATCCGGATGTGGACCCTCAGGTACATCCTTACGTTGCCACTGGTAATAAAAACTCCAAATTTGGTATTAGGAATGAAAAGTTGCAATGGTTTCTAGATGCTGTTAAGGCACATCCTGATGAGCTTAAGCTTGTTGGGGCCCATTGCCATCTTGGTTCCACCATCACCAAGGTGGACATATTCAGAGATGCTGCAGTATTAATGGTCAACTACATTGACCAGATCAGAGATCAAGGTTTTGAAGTTAATTACCTAAACATTGGAGGTGGTCTTGGTATAGATTATTATCATGCTGGTGCCGTTCTTCCTACTCCTAGAGATCTCATTAATACGGTACGGGAGTTGGTCCTTTCACGAGATCTTAATCTAATCATTGAACCCGGGAGATCACTTATTGCCAATACTTGCTGTTTGGTTAATCGAGTGACAGGGGTCAAAACTAATGGGACTAAAAACTTTATTGTTATCGATGGAAGCATGGCTGAACTTATCCGCCCTAGTCTTTATGATGCTTATCAACACATAGAGTTGGTTGCTCCTTCGTCACCTGGTGCTGAGATCACGACTTTTGATGTGGTTGGCCCTGTCTGTGAGTCTGCAGATTTCTTAGGGAAGCAAAGGGAACTCCCAACTCCAACCAAGGGGGCTGGCTTGGTTGTCCATGATGCTGGTGCTTACTGCATGAGTATGGCGTCTACTTACAATCTCAAGATGCGTCCTCCCGAGTACTGGGTTGAAGAAGACGGATCAGTGTCCAAAATCAGGCATGTCGAAGGTCAGCCTAAGTTTATCTTAGGCTTTTTCGAGTTGAATATTTTCATCCCCCGTTTAATCTCGGTTCTACCGCACTTCCGTGGAAGTTGGGTGTGCGGGGGAAAATCATTGAAGTCACCACTATTTAGGTTTGGTCAAGTTTTTAGTTCTAATATGGCTGGCGATCCTTTGACAAGCTCTAATGGCAATGCTAATGTAAATGCACCACCTGATCCTCGGAGGACTTATCAAGTTGTTGTAGCTGCTACTGAAAATATGGGCATTGGTAAGGATGGGAAACTACCATGGAGGTTGCCTTCTGATCTCAGCTTTTTTAAAAACATAACCACAACAACATCCGATCATGGGAAAAGGAATGCAGTTCTAATGGGTCGTAAAACATGGGAGAGTATTCCTTCTGAGCATCGGCCACTACCTGGTCGTCTAAATGTTGTTCTGACTCGCTCTGGGAGTTTTGACATTGCGACTGTTGAAAATGTTATTATATGTGGTAGTATAACGTCTGCTTTGGAATTATTAGCAGCTTCTCCTTACTGTTTGTCAATAGAGAAAGTGTTTGTTATAGGCGGTGGTGAGATATTAAGGGAAGCTCTGAATGCCCCTGAATGTGATGCTGTCCACATCACTGAAATTGAGACAAATGTTGAATGTGACACCTTCATGCCAGCTATTGATAAGTCTATGTTTCAACCATGGTACTCATCCTTTCCAGTGGTGGAAAATAGTTTGCGATATTCGTTCACTAGTTATGTTCGTGTGAGGAGCTCAACTGAATCCCCCATTGATCAGAACAATGGTCTGGACTCTCATAAGAAACCTGATTTTTCTAACTTTGAGGCTAAGAAATTCTCTTTCCTACCTAAGGAGATCTTTGAGAGGCATGAGGAGTACTTGTACCTAAACCTTGTTCAAGAAATCATCTCAGATGGTATTCCTAAGGATGATAGAACAGGGACAGGTACTTTGTCAAGATTTGGTTGCCAGATGCGGTACAACTTGCGCAAAACTTTTCCGCTGCTTACAACTAAGAAAGTATTTTGGCGGGGGGTAGTTGAAGAACTTCTTTGGTTCATCAGTGGTTCAACTAATGCAAAGGTTCTTCAGGAGAAAGGCATTCATATATGGGATGGCAATGCATCCAGAGATTACCTCGATAGTATTGGTTTAAGAGAAAGAGAGGAAGGCGACTTGGGACCTGTATATGGGTTCCAGTGGCGACACTTTGGTGCTAGGTATACGGACATGCATGCTGACTACACTGGTCAAGGATTTGATCAGTTGCTAGATGTTATTAACAAGATAAAAAATAATCCTGATGACCGGAGGATCATTCTTTCTGCATGGAATCCATCTGATCTCAAACTGATGGCACTTCCTCCTTGCCACATGTTCGCTCAGTTTTATGTAGCGAATGGGGAGTTATCGTGTCAAATGTATCAGCGCTCTGCTGACATGGGCCTTGGTGTTCCATTTAATATTGCATCATATGCTCTTCTGACTTGCATGATTGCTCATGTTTGTGGTCTTGCTCGAGGTGACTTCATTCACGTGATTGGAGATGCTCATGTTTACCGTACTCATGTGAGGCCATTGCAGGAGCAGCTTCAGAAACTCCCCAAACCGTTCCCTATTTTGAAGATAAATCCCGAGAAGATGGATATCGATTCTTTTGTGGCAGATGATTTTGAACTAACAGGTACAAGCATCACAGAGGCTTTGGTTGATATGAGTGCAGAAATTGTAGTGGCATCTGAGTCCCTCAATTGGGGTTCTTGTTTGGAGATTGGAGTTGGAATTGGATGCCTCTATTCCAAGGACTGGTTGCCTTGA 3234 43.04 MAAANLYSPSPSLPSTLRHSLNSNPFTRIPFRLHKPFSKTPLSLKAVLSQNPSKTQTQFHHCFSKSSDGFLYCEGIKVQDIMESVDKRPFYLYSKPQITRNVEAYKEALEGLNSIIGYAIKANNNLKVLEHLRKLGCGAVLVSGNELRLALHAGFDPTRCIFNGNGKLLEDLVLAAEQGVFVNVDSEFDLDNIVAAARISGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPDELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDQIRDQGFEVNYLNIGGGLGIDYYHAGAVLPTPRDLINTVRELVLSRDLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVAPSSPGAEITTFDVVGPVCESADFLGKQRELPTPTKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVSKIRHVEGQPKFILGFFELNIFIPRLISVLPHFRGSWVCGGKSLKSPLFRFGQVFSSNMAGDPLTSSNGNANVNAPPDPRRTYQVVVAATENMGIGKDGKLPWRLPSDLSFFKNITTTTSDHGKRNAVLMGRKTWESIPSEHRPLPGRLNVVLTRSGSFDIATVENVIICGSITSALELLAASPYCLSIEKVFVIGGGEILREALNAPECDAVHITEIETNVECDTFMPAIDKSMFQPWYSSFPVVENSLRYSFTSYVRVRSSTESPIDQNNGLDSHKKPDFSNFEAKKFSFLPKEIFERHEEYLYLNLVQEIISDGIPKDDRTGTGTLSRFGCQMRYNLRKTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASRDYLDSIGLREREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCGLARGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPILKINPEKMDIDSFVADDFELTGTSITEALVDMSAEIVVASESLNWGSCLEIGVGIGCLYSKDWLP 1077
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6322224 6338055 + CrPI670011_11g009090.1 Cre11g0909 512654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0909 1077 Pfam Dihydrofolate reductase 545 720 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cre11g0909 1077 SUPERFAMILY Alanine racemase C-terminal domain-like 319 468 IPR009006 GO:0003824(InterPro)
Cre11g0909 1077 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 555 577 IPR017925 GO:0004146(InterPro)
Cre11g0909 1077 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 756 1044 IPR036926 -
Cre11g0909 1077 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 97 343 IPR022644 GO:0003824(InterPro)
Cre11g0909 1077 FunFam Diaminopimelate decarboxylase 95 340 - -
Cre11g0909 1077 ProSitePatterns Thymidylate synthase active site. 909 937 IPR020940 GO:0004799(InterPro)|GO:0006231(InterPro)
Cre11g0909 1077 PRINTS Thymidylate synthase family signature 980 997 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cre11g0909 1077 PRINTS Thymidylate synthase family signature 924 939 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cre11g0909 1077 PRINTS Thymidylate synthase family signature 942 968 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cre11g0909 1077 PRINTS Thymidylate synthase family signature 805 826 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cre11g0909 1077 PRINTS Thymidylate synthase family signature 898 917 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cre11g0909 1077 FunFam Bifunctional dihydrofolate reductase-thymidylate synthase 526 721 - -
Cre11g0909 1077 PANTHER THYMIDYLATE SYNTHASE 1 566 1039 IPR045097 GO:0004146(PANTHER)|GO:0004799(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006231(PANTHER)|GO:0016741(InterPro)
Cre11g0909 1077 Hamap Diaminopimelate decarboxylase [lysA]. 75 478 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cre11g0909 1077 Hamap Thymidylate synthase [thyA]. 764 1050 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cre11g0909 1077 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 289 302 IPR022657 -
Cre11g0909 1077 Pfam Thymidylate synthase 767 1034 IPR023451 -
Cre11g0909 1077 CDD TS_Pyrimidine_HMase 767 1000 IPR023451 -
Cre11g0909 1077 SUPERFAMILY Dihydrofolate reductase-like 541 720 IPR024072 -
Cre11g0909 1077 FunFam Diaminopimelate decarboxylase 332 474 - -
Cre11g0909 1077 NCBIfam diaminopimelate decarboxylase 66 466 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cre11g0909 1077 Gene3D Dihydrofolate Reductase, subunit A 527 722 IPR024072 -
Cre11g0909 1077 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 118 136 IPR022653 -
Cre11g0909 1077 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 723 1035 IPR036926 -
Cre11g0909 1077 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 76 465 IPR009006 GO:0003824(InterPro)
Cre11g0909 1077 CDD PLPDE_III_DapDC 89 455 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Cre11g0909 1077 NCBIfam thymidylate synthase 767 1038 IPR000398 GO:0004799(InterPro)|GO:0006231(InterPro)
Cre11g0909 1077 CDD DHFR 547 719 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cre11g0909 1077 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 344 434 IPR022643 GO:0003824(InterPro)
Cre11g0909 1077 SUPERFAMILY PLP-binding barrel 88 344 IPR029066 -
Cre11g0909 1077 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 543 720 IPR001796 GO:0004146(InterPro)|GO:0046654(InterPro)
Cre11g0909 1077 FunFam Possible thymidylate synthase 758 1048 - -
Cre11g0909 1077 Gene3D Alanine racemase 95 340 IPR029066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0909 K13998 - - csv:101208660 1003.05
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g987 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0127 . . . . . . . Bda01g01504 Bpe02g01702 . Bma01g00752 . . . . . . . . . . . . . . . . . Cla11g00400 Cam11g0445 Cec11g0441 Cco11g0432 Clacu11g0569 Cmu11g0425 Cre11g0909 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43