Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0923 ATGTTGAAGTCGGAGATGACGCCGTCGGCTCGACTCAAACGGCAGCGACCCCACGGCGACTGCCGGAGCTTGTCTTCCATCTCAACTCCGGCAAGTCGGGTCAACCATTTTGAGGATCTAGTTGCACCCGAAGGTTGGTCCGAGTTAGCTAAGTACGAGATCTCCTCTACGAAGTTTCGAACCAATCAGACGTGTTCACCACTAATAGAGGCGTACTCCGTGGTGGAGGGAGAGATTGCGAAAAAGAGAAAAGGGAAGAAGAAGGAAATGAAATGGAAAGGGAGAGATGACAATAATAATGTTGAATGGGAGAATGGAAGAGAGAAGAAAATGAAAGGAAAGGTTGAAGAAGATGAAGAACATGAAGATGAAGATGAAGATGAAGATGAAGATGAATCAAAGATTACGGAGGAAAGAGAGAGATGGAAATGCAATTCAAAAGCTTCAAAAGAAGTTCAAAAATCGGATTATGTTCATGTGAGAGCACGTCGAGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCTATGAAGGTGGCTGCTCTCAATCACAGAGTTGATTTCATCAATGTAGATGACTTCTTGGCCAAACAGGTGTTTCCGACGTTAACGACCGATTGTTCATCCTACTTTAATCAACTTGGAAAGGGCTCAACCTCTCTAACAGTCCCACAAACTCCATTGATCAATAACAACTTGTCTTCAATTACTCATTTTGAACTGTCTTCAACTTGGGGAGGTGATTTACAAAGGTTTGAAGAAGGAGGGCCTCCATTGTTGTCGCCATCAAGCTTTTTATCGCAGCAATGTTCAGGCATTGAAGATGAAAATGAAACATTATTTTTGGACCACAAACTTGTTCCATTTTAA 1014 42.01 MLKSEMTPSARLKRQRPHGDCRSLSSISTPASRVNHFEDLVAPEGWSELAKYEISSTKFRTNQTCSPLIEAYSVVEGEIAKKRKGKKKEMKWKGRDDNNNVEWENGREKKMKGKVEEDEEHEDEDEDEDEDESKITEERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQVFPTLTTDCSSYFNQLGKGSTSLTVPQTPLINNNLSSITHFELSSTWGGDLQRFEEGGPPLLSPSSFLSQQCSGIEDENETLFLDHKLVPF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6485577 6489676 - CrPI670011_11g009230.1 Cre11g0923 512668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0923 337 SMART finulus 172 222 IPR011598 GO:0046983(InterPro)
Cre11g0923 337 MobiDBLite consensus disorder prediction 83 146 - -
Cre11g0923 337 Gene3D - 163 238 IPR036638 GO:0046983(InterPro)
Cre11g0923 337 MobiDBLite consensus disorder prediction 1 33 - -
Cre11g0923 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 216 IPR011598 GO:0046983(InterPro)
Cre11g0923 337 Pfam Helix-loop-helix DNA-binding domain 170 217 IPR011598 GO:0046983(InterPro)
Cre11g0923 337 CDD bHLH_AtBPE_like 156 242 - -
Cre11g0923 337 FunFam Basic helix-loop-helix transcription factor 163 235 - -
Cre11g0923 337 Coils Coil 213 233 - -
Cre11g0923 337 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 82 276 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre11g0923 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 236 IPR036638 GO:0046983(InterPro)
Cre11g0923 337 MobiDBLite consensus disorder prediction 90 117 - -
Cre11g0923 337 MobiDBLite consensus disorder prediction 118 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1844 Cre-Chr10:33003441 Cre11g0923 Cre-Chr11:6485577 2.40E-33 dispersed
Cre11g0923 Cre-Chr11:6485577 Cre11g2070 Cre-Chr11:32485374 5.30E-11 dispersed
Cre11g0923 Cre-Chr11:6485577 Cre02g0851 Cre-Chr2:5344030 3.10E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54664 PF00010 HLH 2.60E-06 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0923 - - - 0.0