Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g0923 | ATGTTGAAGTCGGAGATGACGCCGTCGGCTCGACTCAAACGGCAGCGACCCCACGGCGACTGCCGGAGCTTGTCTTCCATCTCAACTCCGGCAAGTCGGGTCAACCATTTTGAGGATCTAGTTGCACCCGAAGGTTGGTCCGAGTTAGCTAAGTACGAGATCTCCTCTACGAAGTTTCGAACCAATCAGACGTGTTCACCACTAATAGAGGCGTACTCCGTGGTGGAGGGAGAGATTGCGAAAAAGAGAAAAGGGAAGAAGAAGGAAATGAAATGGAAAGGGAGAGATGACAATAATAATGTTGAATGGGAGAATGGAAGAGAGAAGAAAATGAAAGGAAAGGTTGAAGAAGATGAAGAACATGAAGATGAAGATGAAGATGAAGATGAAGATGAATCAAAGATTACGGAGGAAAGAGAGAGATGGAAATGCAATTCAAAAGCTTCAAAAGAAGTTCAAAAATCGGATTATGTTCATGTGAGAGCACGTCGAGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCTATGAAGGTGGCTGCTCTCAATCACAGAGTTGATTTCATCAATGTAGATGACTTCTTGGCCAAACAGGTGTTTCCGACGTTAACGACCGATTGTTCATCCTACTTTAATCAACTTGGAAAGGGCTCAACCTCTCTAACAGTCCCACAAACTCCATTGATCAATAACAACTTGTCTTCAATTACTCATTTTGAACTGTCTTCAACTTGGGGAGGTGATTTACAAAGGTTTGAAGAAGGAGGGCCTCCATTGTTGTCGCCATCAAGCTTTTTATCGCAGCAATGTTCAGGCATTGAAGATGAAAATGAAACATTATTTTTGGACCACAAACTTGTTCCATTTTAA | 1014 | 42.01 | MLKSEMTPSARLKRQRPHGDCRSLSSISTPASRVNHFEDLVAPEGWSELAKYEISSTKFRTNQTCSPLIEAYSVVEGEIAKKRKGKKKEMKWKGRDDNNNVEWENGREKKMKGKVEEDEEHEDEDEDEDEDESKITEERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQVFPTLTTDCSSYFNQLGKGSTSLTVPQTPLINNNLSSITHFELSSTWGGDLQRFEEGGPPLLSPSSFLSQQCSGIEDENETLFLDHKLVPF | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6485577 | 6489676 | - | CrPI670011_11g009230.1 | Cre11g0923 | 512668 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g0923 | 337 | SMART | finulus | 172 | 222 | IPR011598 | GO:0046983(InterPro) | |
Cre11g0923 | 337 | MobiDBLite | consensus disorder prediction | 83 | 146 | - | - | |
Cre11g0923 | 337 | Gene3D | - | 163 | 238 | IPR036638 | GO:0046983(InterPro) | |
Cre11g0923 | 337 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cre11g0923 | 337 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 166 | 216 | IPR011598 | GO:0046983(InterPro) | |
Cre11g0923 | 337 | Pfam | Helix-loop-helix DNA-binding domain | 170 | 217 | IPR011598 | GO:0046983(InterPro) | |
Cre11g0923 | 337 | CDD | bHLH_AtBPE_like | 156 | 242 | - | - | |
Cre11g0923 | 337 | FunFam | Basic helix-loop-helix transcription factor | 163 | 235 | - | - | |
Cre11g0923 | 337 | Coils | Coil | 213 | 233 | - | - | |
Cre11g0923 | 337 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 82 | 276 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cre11g0923 | 337 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 164 | 236 | IPR036638 | GO:0046983(InterPro) | |
Cre11g0923 | 337 | MobiDBLite | consensus disorder prediction | 90 | 117 | - | - | |
Cre11g0923 | 337 | MobiDBLite | consensus disorder prediction | 118 | 134 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre10g1844 | Cre-Chr10:33003441 | Cre11g0923 | Cre-Chr11:6485577 | 2.40E-33 | dispersed | |
Cre11g0923 | Cre-Chr11:6485577 | Cre11g2070 | Cre-Chr11:32485374 | 5.30E-11 | dispersed | |
Cre11g0923 | Cre-Chr11:6485577 | Cre02g0851 | Cre-Chr2:5344030 | 3.10E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54664 | PF00010 | HLH | 2.60E-06 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g0923 | - | - | - | 0.0 |