Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0945 ATGGCTAAGAAGGACGATTCTGCAAGGCCTCCACTTCAGCGCCCCACCATTACTCTGCCGCCGCGCCCTTCTATGGAGGCTTTTTTCGCTGGCGGACCCACTGGAGTTAGCCCTGGCCCGATGACTCTTCTCTCCAGTTACTTCGCCGACGGTGCCGTTGACTCGCCCTCCTTCTCCCAGCTTCTCGCCGGAGCTATGGCCTCTCCGATGGCTATGGGGTTTTTCGGAACTGGGTCCACACCCAATTATTACGCCAAGGATGGAACCGCCTCGGAATTGGAATTTGGGATGAAACAATCGAAGCCGCTGAATTTAGTGGTAGCTCGGCCTCCTTTGTTCTCGGTCCCGCCGGGGCTTAGTCCTTCTGGGTTGCTTAATTCGCCTGGGTTTTATCCTCCTCAGAGTCCATTCGGAATGTCGCACCAGCAAGCATTGGCTCAGGTTACTGCTCAAGCGGCATTGGCAAATTCTCATATGCATATGCAGCAAGCTGAATATCAACATTCTTCGGTACCAGCTCCTACAGAACCGTTGACACGGGATCCATCATTTTCTCTTGATGAAGCATCTCAACTGGCCATATTACCCTCCACTTCAGACACAAAAAGTCTGATTGCAGAACCGACAGAAGTCTCTCACCCTGACAGAAAATATCAACCTCCTCCTCCTCACGTCTCTGATAAACCTGCAGATGATGGCTATAATTGGCGTAAATATGGACAGAAGTTGGTTAAGGGCAGTGAATATCCCCGAAGCTATTACAAATGCACTCATTTGAATTGCCCTGTAAAAAAGAAGATTGAGCGCTCACCTGATGGTCAGATTACTGAAATTATTTACAAAGGACAGCACAACCACGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGTGAACCGAGTGGATGTACAAATTCTTTGATGAAGCCTGAATGTGGTTTGCAAAATCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGGTCTAGCGACAGTGAAGAACGAGCTGATACAGAGATAACAGATGACAGAGATGAAGATGAGCCAAATCCAAAGAGGCAGAACATTGACGCAGGGACATCTGGTGTTGCCTTGTCACATAAAACACTCACAGAACCAAAAATCATTGTTCAAACAAGAAGTGAGGTTGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTACGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTTGAGAGATCTTCAACAGACTCGAAAGCTGTTGTTACTACATACGAAGGGAAACATAACCATGATGTTCCTGCAGCTAGAAACAGCAGCCACCACACGGTCAACAATACTGTCCCCCAGATCAAACCACACAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATATGGAACTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGCAAATCACCGTGTAA 1515 47.13 MAKKDDSARPPLQRPTITLPPRPSMEAFFAGGPTGVSPGPMTLLSSYFADGAVDSPSFSQLLAGAMASPMAMGFFGTGSTPNYYAKDGTASELEFGMKQSKPLNLVVARPPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALANSHMHMQQAEYQHSSVPAPTEPLTRDPSFSLDEASQLAILPSTSDTKSLIAEPTEVSHPDRKYQPPPPHVSDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPSGCTNSLMKPECGLQNQAGILNKSSENVQLGSSDSEERADTEITDDRDEDEPNPKRQNIDAGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVPQIKPHKVVAQKHPLLKEMEYGTNDQRPAVLRLKEEQITV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6767412 6772000 - CrPI670011_11g009450.1 Cre11g0945 512690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0945 504 SMART WRKY_cls 230 288 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g0945 504 SMART WRKY_cls 390 449 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g0945 504 SUPERFAMILY WRKY DNA-binding domain 382 450 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g0945 504 MobiDBLite consensus disorder prediction 195 234 - -
Cre11g0945 504 MobiDBLite consensus disorder prediction 326 369 - -
Cre11g0945 504 ProSiteProfiles WRKY domain profile. 225 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g0945 504 FunFam WRKY transcription factor 33 377 443 - -
Cre11g0945 504 MobiDBLite consensus disorder prediction 1 32 - -
Cre11g0945 504 ProSiteProfiles WRKY domain profile. 385 450 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g0945 504 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 163 461 IPR044810 GO:0003700(InterPro)
Cre11g0945 504 FunFam WRKY transcription factor 221 290 - -
Cre11g0945 504 Gene3D WRKY domain 375 451 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g0945 504 Gene3D WRKY domain 223 290 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g0945 504 MobiDBLite consensus disorder prediction 281 311 - -
Cre11g0945 504 SUPERFAMILY WRKY DNA-binding domain 227 289 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g0945 504 Pfam WRKY DNA -binding domain 231 287 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre11g0945 504 Pfam WRKY DNA -binding domain 391 448 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2227 Cre-Chr2:35905384 Cre11g0945 Cre-Chr11:6767412 3.30E-60 dispersed
Cre06g2110 Cre-Chr6:28904915 Cre11g0945 Cre-Chr11:6767412 9.10E-39 dispersed
Cre09g0476 Cre-Chr9:4541985 Cre11g0945 Cre-Chr11:6767412 1.90E-22 dispersed
Cre10g0629 Cre-Chr10:5852646 Cre11g0945 Cre-Chr11:6767412 1.30E-68 dispersed
Cre10g0687 Cre-Chr10:6515505 Cre11g0945 Cre-Chr11:6767412 5.30E-72 dispersed
Cre10g1316 Cre-Chr10:26507672 Cre11g0945 Cre-Chr11:6767412 6.40E-24 dispersed
Cre10g2352 Cre-Chr10:37666503 Cre11g0945 Cre-Chr11:6767412 3.60E-66 dispersed
Cre11g0945 Cre-Chr11:6767412 Cre11g1198 Cre-Chr11:9855583 3.30E-17 dispersed
Cre11g0945 Cre-Chr11:6767412 Cre05g2563 Cre-Chr5:36872689 3.00E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54665 PF03106 WRKY 3.20E-25 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0945 - - - 0.0