Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0982 ATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTTGAAGACTATGTTAATCCTAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGTTTCTTAAATGCATACACATTTATTTTTCGAAGAGGAGAAGTGCATTCTGTCTCGTCATCAATTCAAGGGGCAACATCTATGAATTCCACAGCATCAACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGATCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAAGAGTCAGAACCTTTAAGAAGTGATGTGGATACCGATTCAGATTCTTTGGGCTCAGCAGGCAAATGGAATGGTTCTGCTTGTCTTGAGGAATCTAAAGAAAACCTTGGCAAATCATCTCTAAAGTTCCCTTCAACTAAATCTACCACTGGACTTGGGTATTCTTATACATCCTCCGAAGACGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTAATGGCATTCGATGAAACGACTTGA 684 41.52 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTFIFRRGEVHSVSSSIQGATSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSDVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7093144 7097559 - CrPI670011_11g009820.1 Cre11g0982 512727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0982 227 SMART ring_2 177 217 IPR001841 -
Cre11g0982 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Cre11g0982 227 MobiDBLite consensus disorder prediction 56 89 - -
Cre11g0982 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Cre11g0982 227 Pfam Ring finger domain 176 217 IPR001841 -
Cre11g0982 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 225 IPR013083 -
Cre11g0982 227 CDD RING-H2_AIRP1-like 173 221 - -
Cre11g0982 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 223 - GO:0004842(PANTHER)
Cre11g0982 227 MobiDBLite consensus disorder prediction 103 123 - -
Cre11g0982 227 MobiDBLite consensus disorder prediction 56 76 - -
Cre11g0982 227 MobiDBLite consensus disorder prediction 103 129 - -
Cre11g0982 227 SUPERFAMILY RING/U-box 171 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0982 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g0982 Cre-Chr11:7093144 Cre09g2267 Cre-Chr9:41855601 3.90E-18 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g0424 . 77 566 C3H Transcription Factor Family AT2G31510 76.0 9.4e-227 783.1
Cre11g1362 . 5 286 C3H Transcription Factor Family AT2G31510 78.7 5.5e-126 448.4
Cre08g0424 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.5e-169 591.7
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31770 59.7 1.4e-77 287.7
Cre08g0424 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.7e-167 584.3
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31760 58.4 3.2e-76 283.1
Cre04g1144 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 2.1e-47 186.0
Cre04g1144 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 2.1e-47 186.0
Cre11g0982 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 5.5e-76 281.2
Cre06g1931 . 43 347 C3H Transcription Factor Family AT1G11020 75.3 4.3e-135 478.0
Cre07g1824 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 4.3e-68 255.0
Cre04g0306 . 2 362 C3H Transcription Factor Family AT5G08750 61.2 3.9e-121 431.8
Cre10g1081 . 1 534 C3H Transcription Factor Family AT3G16090 61.9 1.1e-169 593.6
Cre11g0982 . 1 225 C3H Transcription Factor Family AT5G38895 58.0 4.8e-73 271.9
Cre08g1481 . 16 227 C3H Transcription Factor Family AT1G19310 66.8 1.4e-79 293.1
Cre04g1247 . 40 249 C3H Transcription Factor Family AT1G19310 59.4 8.3e-69 257.3
Cre04g1526 . 9 323 C3H Transcription Factor Family AT2G22120 83.6 3.7e-159 558.1
Cre08g1007 . 70 177 C3H Transcription Factor Family AT5G07040 67.6 3.4e-40 161.8
Cre06g2366 . 30 415 C3H Transcription Factor Family AT1G18470 75.6 4.2e-175 611.3
Cre09g1932 . 121 352 C3H Transcription Factor Family AT1G68200 50.6 2.4e-50 196.4
Cre08g0424 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.5e-169 591.7
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31770 59.7 1.4e-77 287.7
Cre08g0424 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.7e-167 584.3
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31760 58.4 3.2e-76 283.1
Cre07g0431 . 1118 1465 C3H Transcription Factor Family AT2G30580 50.9 2.8e-81 299.3
Cre01g0328 . 46 278 C3H Transcription Factor Family AT5G55970 68.2 3.6e-94 342.0
Cre04g0306 . 2 362 C3H Transcription Factor Family AT5G63780 57.5 6.6e-116 414.5
Cre10g1877 . 1 426 C3H Transcription Factor Family AT3G58030 52.8 2.8e-105 379.4
Cre01g0328 . 35 347 C3H Transcription Factor Family AT4G26580 61.5 5.8e-111 397.9
Cre04g0718 . 69 533 C3H Transcription Factor Family AT5G01960 68.5 1.6e-166 582.8
Cre07g0915 . 1 484 C3H Transcription Factor Family AT5G01960 57.7 4.8e-150 528.1
Cre02g1390 . 1 155 C3H Transcription Factor Family AT2G04240 59.3 1.5e-43 172.9
Cre02g0637 . 1 149 C3H Transcription Factor Family AT2G04240 58.4 5.4e-38 154.5
Cre02g2593 . 1 242 C3H Transcription Factor Family AT5G19430 52.4 3.8e-62 235.3
Cre07g1478 . 130 577 C3H Transcription Factor Family AT5G45290 52.7 5.6e-103 372.1
Cre02g2593 . 40 242 C3H Transcription Factor Family AT5G12310 55.8 2.2e-57 219.5
Cre06g2263 . 131 425 C3H Transcription Factor Family AT5G05810 52.5 4.1e-74 275.8
Cre11g1124 . 53 204 C3H Transcription Factor Family AT5G05830 59.2 2.6e-45 179.1
Cre10g2275 . 70 213 C3H Transcription Factor Family AT5G05830 57.6 4.1e-43 171.8
Cre04g0837 . 451 581 C3H Transcription Factor Family AT5G05830 61.1 9.6e-40 160.6
Cre06g1709 . 30 426 C3H Transcription Factor Family AT4G28890 50.5 2.3e-96 349.7
Cre11g0982 . 1 226 C3H Transcription Factor Family AT5G15790 59.9 5.2e-74 274.6
Cre11g1155 . 476 747 C3H Transcription Factor Family AT3G55530 80.2 2.1e-114 409.1
Cre09g0639 . 27 299 C3H Transcription Factor Family AT1G63900 75.5 1.0e-116 416.8
Cre05g0362 . 26 408 C3H Transcription Factor Family AT2G44580 53.5 6.7e-119 424.5
Cre08g1481 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 9.9e-41 163.3
Cre05g1763 . 3 314 C3H Transcription Factor Family AT5G20910 63.8 5.4e-111 397.9
Cre10g1081 . 119 534 C3H Transcription Factor Family AT1G65040 56.0 2.0e-113 406.0
Cre04g1247 . 41 251 C3H Transcription Factor Family AT2G23780 61.6 3.3e-73 271.9
Cre08g1481 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 7.6e-70 260.8
Cre10g1754 . 1 317 C3H Transcription Factor Family AT3G10810 54.2 5.8e-83 305.4
Cre09g2271 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 2.1e-45 179.1
Cre09g1874 . 18 353 C3H Transcription Factor Family AT1G68070 63.7 3.3e-117 418.7
Cre11g2285 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.9e-51 198.7
Cre10g0275 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 5.3e-45 177.9
Cre08g1229 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 2.9e-112 402.5
Cre10g0275 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.6e-39 157.9
Cre08g0424 . 77 566 C3H Transcription Factor Family AT2G31510 76.0 9.4e-227 783.1
Cre11g1362 . 5 286 C3H Transcription Factor Family AT2G31510 78.7 5.5e-126 448.4
Cre04g1144 . 7 168 C3H Transcription Factor Family AT2G35910 63.4 4.3e-54 208.4
Cre10g1934 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 5.4e-41 164.9
Cre04g0159 . 1 302 C3H Transcription Factor Family AT2G41980 78.8 3.9e-146 514.6
Cre05g1081 . 659 916 C3H Transcription Factor Family AT2G41980 80.6 1.6e-128 456.1
Cre02g2680 . 106 402 C3H Transcription Factor Family AT2G41980 71.8 4.0e-127 451.4
Cre09g1760 . 48 305 C3H Transcription Factor Family AT2G41980 79.1 1.3e-125 446.4
Cre06g0897 . 43 301 C3H Transcription Factor Family AT2G41980 75.3 2.7e-123 438.7
Cre05g2840 . 158 408 C3H Transcription Factor Family AT2G41980 79.3 6.7e-122 434.1
Cre05g0667 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.8e-95 345.9
Cre10g2149 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 1.1e-85 313.9
Cre06g2561 . 58 352 C3H Transcription Factor Family AT3G47990 72.1 4.0e-127 451.4
Cre01g1271 . 348 639 C3H Transcription Factor Family AT3G47990 70.2 9.5e-121 430.3
Cre11g2285 . 4 185 C3H Transcription Factor Family AT1G20823 56.0 4.7e-52 201.4
Cre10g0275 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.3e-46 183.3
Cre01g0677 . 38 406 C3H Transcription Factor Family AT3G18930 54.4 3.3e-84 309.3
Cre10g0309 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 7.6e-75 277.3
Cre10g2184 . 3 273 C3H Transcription Factor Family AT5G02750 53.0 2.6e-67 252.7
Cre06g2366 . 34 467 C3H Transcription Factor Family AT1G73950 68.0 2.8e-166 582.0
Cre08g0157 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.9e-39 157.9
Cre09g1874 . 15 251 C3H Transcription Factor Family AT2G01735 60.4 3.3e-74 275.4
Cre10g0593 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 4.6e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003469 3 1 2 3 3 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 2 1 1 1 1 1 2 4 1 48