Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0996 ATGGGAATGAAGAGAACTGAGGCTACTGTTTCCTGTCTTGTGGCTTCTTTATTGTTTTGGGCTTCTGCAATAAATGGCTTGTTATCTCCCAAAGGTGTTAACTATGAAGTTCAAGCTTTGATGGGTATAAAAGCTTCTCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGGGATTCTGTTGACCCATGTAGTTGGACTATGGTTACTTGCTCTCCTGAGAGCCTTGTCATTGGCTTAGGGACTCCAAGCCAGAACCTGTCTGGGACTCTTTCTCCAACCATTGGGAATTTGACAAACCTTCAAATTGTGCTGTTGCAGAACAACAATATAACAGGCCCAATTCCCCCAGAGCTTGGGAGGCTCTCAAAGCTCCAAACACTTGACCTATCAAACAATTTCTTCACAGGGGAAATTCCTTCTCCTTTAGGCCATTTGAGAAGCCTACAGTACTTGAGGCTTAACAACAACAGTCTTTCTGGGGTAATTCCAATGTCTTTAGCTAACATGACACAACTTGCCTTTCTTGATGTGTCTTATAATAACATCAGTGGCCCTCTGCCTAGATTTCCCAGCAAAACATTCAACATTGTTGGGAACCCTCTGATTTGTGCAACTGGGTCCGAGGCCGGTTGCCACGGTACAACTCTAATGCCCATGTCCATGAATTTGAACAGTACACAAACTGGTTTACCTGCTGTGAAATTGAAGAGTCATAAAATGGCCCTTACATTTGGCTTGAGCCTAGCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTCATATGGTGGAGAAAACGAAGCAATCGACCTACATTCTTCGATGTAAAAGACCAACAACATGAGGAAATTTCGCTTGGAAATCTGAGAAGGTTCCAATTTAGAGAACTTCAGATAGCAACAAACAATTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCAGATGGAACGGTTGTTGCTGTTAAAAGGCTCAAAGATGGCAATGCAAGCAGAGGCGAAATCCAGTTTCAGACTGAAGTTGAGATGATCAGTCTAGCCGTGCACCGTCATCTCCTCAGATTATACGGATTTTGCAACACACCAACTGAAAGGCTTCTTGTTTACCCATATATGTCGAATGGAAGTGTTGCATCACGTCTCAAAGGAAAACCGGTATTAGACTGGGGAACAAGGAAGAGGATTGCTATAGGAGCTGCAAGGGGATTGTTATACCTACATGAACAGTGTGACCCAAAGATAATACATAGAGATGTTAAGGCTGCAAACATATTGCTTGATGACTACTGCGAGGCTGTCGTCGGAGATTTCGGGTTAGCAAAGCTTCTGGATCATCAAGATTCACATGTCACAACTGCTGTGAGAGGCACCGTGGGACATATAGCTCCTGAGTATCTATCCACCGGACAGTCCTCCGAGAAAACGGATGTTTTCGGCTTTGGAATCCTACTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGACTGGGTGAAGAAGATTCACCTAGAGAAGAAGCTGGAAATGTTAGTGGACAAGGATCTGAAAGCCAACTATGACAGAGTTGAACTAGAGGAGATGGTTCAAGTGGCTTTATTGTGCACACAATACCTACCAGGACATAGACCAAAGATGTCAGAAGTTGTCAGAATGCTTGAAGGAGAAGGGCTTGCTGTGAGATGGGAAGCTTCTCAGAGAGTTGACTCAACAAAGTGCAAACCCCATGATTTCTCTTCCTCAGACAGATACTCTGATCTCACAGATGATTCATCATTGTTGGTTCAAGCCATGGAGCTCTCTGGTCCAAGATCCTCACCAGTGACCACACTTTCGAGCGGAGGATGA 1914 44.04 MGMKRTEATVSCLVASLLFWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSPTIGNLTNLQIVLLQNNNITGPIPPELGRLSKLQTLDLSNNFFTGEIPSPLGHLRSLQYLRLNNNSLSGVIPMSLANMTQLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNSTQTGLPAVKLKSHKMALTFGLSLACLCLIVLVFGLFIWWRKRSNRPTFFDVKDQQHEEISLGNLRRFQFRELQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEMLVDKDLKANYDRVELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVRWEASQRVDSTKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPRSSPVTTLSSGG 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7251364 7256558 - CrPI670011_11g009960.1 Cre11g0996 512741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0996 637 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 626 - -
Cre11g0996 637 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Cre11g0996 637 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
Cre11g0996 637 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Cre11g0996 637 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Cre11g0996 637 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515(InterPro)
Cre11g0996 637 ProSiteProfiles Protein kinase domain profile. 306 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g0996 637 SUPERFAMILY Protein kinase-like (PK-like) 282 576 IPR011009 -
Cre11g0996 637 FunFam Somatic embryogenesis receptor-like kinase 1 383 595 - -
Cre11g0996 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g0996 637 SUPERFAMILY L domain-like 35 305 - -
Cre11g0996 637 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515(InterPro)
Cre11g0996 637 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524(InterPro)
Cre11g0996 637 Pfam Protein tyrosine and serine/threonine kinase 309 575 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g0996 637 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 215 - -
Cre11g0996 637 FunFam Somatic embryogenesis receptor kinase 1 275 382 - -
Cre11g0996 637 SMART serkin_6 306 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2140 Cre-Chr6:29185208 Cre11g0996 Cre-Chr11:7251364 3.10E-185 dispersed
Cre08g1725 Cre-Chr8:29510445 Cre11g0996 Cre-Chr11:7251364 7.10E-195 dispersed
Cre09g1792 Cre-Chr9:36378118 Cre11g0996 Cre-Chr11:7251364 9.20E-219 dispersed
Cre10g1082 Cre-Chr10:21439598 Cre11g0996 Cre-Chr11:7251364 3.20E-131 dispersed
Cre11g0996 Cre-Chr11:7251364 Cre11g1014 Cre-Chr11:7454804 1.20E-72 dispersed
Cre11g0996 Cre-Chr11:7251364 Cre04g1994 Cre-Chr4:37315942 5.20E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64540 PF00069 Pkinase 6.00E-44 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0996 - - - 0.0