Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1042 ATGGCGGATCTCATTCCACCACCACATAGATCGGCCAACGACTTCTTTTCCGATCCACTTGATTCTCATCCTCTCTGGTTCAAGCCCGACCTATTTCTCTCCCCGAATTTTGATTCCGAGTCCTACATATCTGAGCTTCGAACATTCGTCCCATTTGACACTCTCCGATCTCAGCTCCACTCTCATCTTTCCGCTCTGAACCGTGAGCTCATTGACTTGATCAATCGTGATTATACCGATTTTGTCAACCTGAGCACAAAGCTGGTCGATGTGGAAGCGGCAGTCGTACGAATGCGAGCTCCTTTGGTTGAACTCAGGGAGAAAATTGAGCAATTTAGGGGTTCCGTGGAGTTTTCTCTATCAGCTTTGCAGAATGGATTGCGGCAGAGATCAGAGGCAGCATCGGCCAGAGAGGTCTTGGAATTGTTGCTCGATACATTTCACGTCGTCTCGAAGGTTGAAAAACTGATCAAGGAGCTTCCAAGTGCACCTGCTGATGGCTCAAACGGAACCATGAATTTAACAGATAAAAGTGCATTAAGTAATGGTGCTTCTTTACCACACATGGAGAACGGAACAAATCTTAGAGAAACACAGAGTATGCTCTTGGAAAGAATTTCCAGTGAAATGAATCGGCTGAAATTTTACATCGCTCATGCACAGGATCTTCCCTTCATTCAAAATATGGACAAGAGGATTCAGAGTGCCAGCCTGTTGCTGGACACGAGCTTGGGACATTGTTTTGTTGATGGACTTGCACATCATGATGAAAATGCTATTTACAATTGCCTACGTGCCTATGCTGCCATAGATAACACCACAAGTGCAGAAGAAATTTTTCGCAGTACTGTTGTATCACCAACAATTCATAAAGTTTTTCCACATAGAGTTTCTGGCATGGATGCTGGATCATCTGATGATGATTTGGAGAATGATTACAAGCAAATGAAGCAATATATTGATAAAGACTGCAAATTTTTGTTAGAAATATCTGCTACAGAAAACTCAGGACTACATGTATTTGATTTCTTGGCTAATTCAATCCTGAAAGAGGTTCTCTCTGCTATCCAAAAGGCAAAACCAGGTGCATTTTCCCCAGGAAGACCTACTGAATTCTTAAAGAACTACAAGTCGAGCGTTGATTTCTTGGCATACTTGGAAGGCTATTGTCCATCCAGATCTGCTGTTGCTAAATTTCGAGCTGCATCTGTGTATAATGAGTTCATGAAGCAATGGAATATTGGGGTTTATTTTTCTCTGAGGCTTCAGGAAATAGCTGGGGCTTTGGATTCGTCCCTTTCAGCACCCATTCTAACCCCCATACAAACTTCATCTTCTGGCGGGGTAAATAATCAGGATCTAACATTAAAGCAGAGTGTGATGCTTTTAGACTGTCTGACAGCATGCTGGAGAGATGATGTTCTCGTCCTTTCTTGTTCTGACAAGTTTCTTCGTCTATCTTTGCAGCTCCTTTCAAGATACTCCAACTGGTTGTCATCTGGTCTAGCTGCCCGTAAGACGGGGACAGGCTCCCATCCAGGTTCTGAATGGGCTGTAGCAGCTGCCCCAGATGATTTGATATATATAATCCATGACCTTGGTTATCTAGCCACGGTGGTAGCTGGTAATTTTTTGGAAACTGTACTTCAGCTCCTATCGTCATGCCCTGCAGATGTTCTCGATTCAGTAAAGCAGAGTATTTTGCACAGTGGAAAGTCATTGAATAATTTAATGCCCAAAGTTATTGGTGCCATAGTTGCTTCACTGGTTGAGAAGTCTGTTGAGGACTTGAGACAGCTGAAGGGTATAACAGCAACATACAGGATGACCAATAAACCACTACCTGTAAGGCATTCACCCTATGTATCAGGGTTGCTACGCCCCTTAAAGGCCTTATTGGATGGAGAGAGGGCGTCAACTTTTTTGACAACGGAAACAAGGAATGCACTGCTGATCGATGCTGTGACAGAGATTACTGCTCGTTATTACGAGCAAGCAGCTGATCTTGTTAGCTTGGCTAGGAAAACAGATTCGTCACTCCAGAAAATCCGGCAGGGAGTACAAAGACGAGCTGGAGCAAGCTCAGATGTTTCAGACCATAACATCTCTGACACTGACAAGATTTGCATGCAACTCTTTCTTGATATTCAGGAGTATGGTCGCAACCTTTCAGCCCTTGGGGTTGAAGCAGCGACCGCGCCTCTTGCAGCACACAGCCCGCTGCTACAAAACTCCATCTCGAGAGAGAAATCGGATCACTTTGAAATGGCGGTCGCTTTCCATGATGTCAAGTCTGCAGCCGGTTTGAAAAAACTCGATGAATACTTGCTTAGTCGTAGCTACATTTCCGGGTATCAGCCTTCAAAGGATGATGTTACCGTTTATGAAGCGATCTCCAAACCCGTTTCCAGTGAATATGTTAACGTGTCTAGGTGGAGTAATCACATTGAAGCACTCTTGAGAGTTTCCGCTGTTTTTGGAGAGGGTTCTGGTGTTAAGTTCGATGCAGTTGCAACCCCACCAGCTGCAGATGCAAAGGCTGCCGATGACGATGATGACGACGACATGGACCTATTTGGTGAAGAGACCGAAGAGGAAAAGAAGGCTGCTGAAGAGCGTGCAGCTGCCATTAAAGCTTCTGCAAAGAAGAAAGAGAGTGGCAAATCATCAGTTCTGATGGACATCAAACCTTGGGATGACGAAACTGACATGAAGAAACTTGAAGAGGCTGTAAGAAGCGTTCAGATGGAAGGCTTGCTTTGGGGAGCATCGAAACTCGTCCCTGTTGGATATGGTATTAAGAAATTGCAGATAATGCTCACAATTGTTGATGACCTTGTAGCTGTGACATCGTGGCCTTCAACAAAATATAATTTCTGTTCGTCAGAACCAAAGACAGCTGGTTTCAAAGATGTTGCTGAGTCTGAGGAAGATGTTTAG 2940 44.29 MADLIPPPHRSANDFFSDPLDSHPLWFKPDLFLSPNFDSESYISELRTFVPFDTLRSQLHSHLSALNRELIDLINRDYTDFVNLSTKLVDVEAAVVRMRAPLVELREKIEQFRGSVEFSLSALQNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSAPADGSNGTMNLTDKSALSNGASLPHMENGTNLRETQSMLLERISSEMNRLKFYIAHAQDLPFIQNMDKRIQSASLLLDTSLGHCFVDGLAHHDENAIYNCLRAYAAIDNTTSAEEIFRSTVVSPTIHKVFPHRVSGMDAGSSDDDLENDYKQMKQYIDKDCKFLLEISATENSGLHVFDFLANSILKEVLSAIQKAKPGAFSPGRPTEFLKNYKSSVDFLAYLEGYCPSRSAVAKFRAASVYNEFMKQWNIGVYFSLRLQEIAGALDSSLSAPILTPIQTSSSGGVNNQDLTLKQSVMLLDCLTACWRDDVLVLSCSDKFLRLSLQLLSRYSNWLSSGLAARKTGTGSHPGSEWAVAAAPDDLIYIIHDLGYLATVVAGNFLETVLQLLSSCPADVLDSVKQSILHSGKSLNNLMPKVIGAIVASLVEKSVEDLRQLKGITATYRMTNKPLPVRHSPYVSGLLRPLKALLDGERASTFLTTETRNALLIDAVTEITARYYEQAADLVSLARKTDSSLQKIRQGVQRRAGASSDVSDHNISDTDKICMQLFLDIQEYGRNLSALGVEAATAPLAAHSPLLQNSISREKSDHFEMAVAFHDVKSAAGLKKLDEYLLSRSYISGYQPSKDDVTVYEAISKPVSSEYVNVSRWSNHIEALLRVSAVFGEGSGVKFDAVATPPAADAKAADDDDDDDMDLFGEETEEEKKAAEERAAAIKASAKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSVQMEGLLWGASKLVPVGYGIKKLQIMLTIVDDLVAVTSWPSTKYNFCSSEPKTAGFKDVAESEEDV 979
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7837226 7851990 + CrPI670011_11g010420.1 Cre11g1042 512787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1042 979 Gene3D - 732 830 - -
Cre11g1042 979 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 852 860 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Cre11g1042 979 Gene3D - 881 964 IPR014717 -
Cre11g1042 979 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 2 11 734 IPR009316 GO:0006891(PANTHER)|GO:0007030(InterPro)|GO:0007030(PANTHER)|GO:0015031(InterPro)|GO:0016020(InterPro)|GO:0017119(PANTHER)
Cre11g1042 979 MobiDBLite consensus disorder prediction 841 865 - -
Cre11g1042 979 Pfam EF-1 guanine nucleotide exchange domain 890 949 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cre11g1042 979 SMART EF1_GNE_2 888 978 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cre11g1042 979 CDD EF1B 886 947 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cre11g1042 979 Pfam COG complex component, COG2, C-terminal 410 716 IPR024603 -
Cre11g1042 979 Pfam COG2 N-terminal 25 99 IPR024602 -
Cre11g1042 979 FunFam Elongation factor 1-beta 1 like 882 959 - -
Cre11g1042 979 SUPERFAMILY GST C-terminal domain-like 763 824 IPR036282 -
Cre11g1042 979 FunFam Elongation factor 1-delta 1 758 833 - -
Cre11g1042 979 MobiDBLite consensus disorder prediction 847 861 - -
Cre11g1042 979 SUPERFAMILY eEF-1beta-like 885 950 IPR036219 -
Cre11g1042 979 Coils Coil 860 880 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1042 K20289 - csv:101215350 1370.53