Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1047 ATGAAAAGGCTACTGGGGTTGTTCTTCTTGTTCGTTGTGGTTCCAGTGTTGGTGAGATCTCTGAACCCACCTCTGAACGACGACGTTTTGGGGCTGATTGTGTTCAAGGCTGACATTGAAGATCCTAAAGGGAAACTTGCTTCGTGGAATGAAGATGACGATAACCCATGTAATTGGGTTGGTGTAAAATGCAACCCCAGATCCAATAGAGTTGTTGAGCTCAATCTTGATGGCTTCTCTCTCAATGGCAGGCTTGGCCGTGGTCTTCTTCAGTTGCAGTTTCTTCGTAAACTCTCTCTTTCGAACAACAATCTTACTGGAAATTTAAGTCCTAATAATGCTCGCTTTGAAAATCTTCGAGTGGTCGATTTAAGCGGCAACGGTTTTCATGGGATGATTCCGGATGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTAATCTCTTTGGCTAAGAACAAATTTTCAGGGAAAATCCCGGAAAGTTTGGGCTCTTGTTCCAGTCTTGCTGCTGTTAATTTGTCTTCTAATCAGTTTTCAGGTTCATTGCCTTCTGGGATTTGGTCCTTGACCGGGCTTCGATCTTTGGATTTGTCTGATAATGTGTTAGAAGGTGAAATTCCACCGGAAGTGAAGGGTATGAATAATTTGCGAGCTATTAATTTGGGGAAGAATCGGTTTTCTGGACAGATCCCAGATGGGATTGGGAGTTGTTTGCTCTTGAGGTCTGTTGATCTCAGTGAGAATTCTTTCTCCGGCGACGTTCCGGCGACAATGCAGAAGCTTAGTTTATGCAGTACTCTTAATTTAAGAAGAAACTCATTTGAAGGGAAGGTTCCTGAATGGATTGGTGGAATGGATGGCCTTGAAATCTTGGACCTTTCTGGGAATAGATTTTCTGGTCCGGTTCCAAGTTCATTTGGGAATCTTCAAAAACTGAAGGTTTTGAATTTTTCTGAAAATGGTTTAACTGGTAGCTTGGCTGAATCCATACTTCCTTCTCAAAACCTTTCAGCCATGGAGCCCAGCCGCGGTTCTCTCACTGGTGTTCTTCCGGCCTGGATTCTGAAGCTGGGTTCGCAAAATGTATTGCCTTCTGATATCAAAAGAAGCTCTCTTTCTACAACTGTGGGAAAAGCTCTTGTTAATCTTCAAGTTTTAGATTTGTCCCACAATGCACTTTCTGGTGAAATTTCACCTGATATTGGGATATTAAGTAACTTGCAGGTGTTAAACCTGTGTAAGAACTCATTTGTCGGGACTATTCCAGAGAGTATTGGAGGCTTGAAGGCCTTGGATTTTCTTGACTTGAGTGAGAACCAGTTGAATGGAACCATTCCCGAAACACTCGGCGGAGACATATCATTGAAAGAAGTGAGACTGGAGAAGAACTTGCTGGAGGGTGAAGTTCCAAAATCAATTGGGAACTGTTCTTCACTTGTAACTTTGGACATATCGGAAAACAGATTAACTGGCTCCATACCAGCAGAATTGTCTCAACTGATCAATCTTCAAATTGTGGACTTGTCAACAAACAATCTCAGTGGTGCACTGCCAAAACAGTTGGCCAATCTTCCTAACCTTCTTTTGTTTAACATTTCTCACAACAATCTGCAAGGCGAACTGCCTGCAGGTGGCTTTTTCAATACAATCTCTCCTTCCTCTGTGGCTGGAAATCCTTCCATTTGTGGTTCTATTGTCAAGAAGTCTTGCCCTGGCGTCCTTCCAAAGCCTATTGTTCTCAATCCCAACTCATCTTCTGACTCTGGTTCTCCTTCATTACCTTCAACTCTTGGTCACAAAAGAATCATCCTCAGCATCTCTGCACTCATTGCTATTGGTGCAGCTGCTGTTATCCTCGTCGGTGTTGTTGCAATCACCGTCATTAACCTCCATGTTCGATCGTCTGCAAATCGTCCTGAAGCAGCCATCATGTTCTCAGGAGGGGATGACTTCAGCCACTCCCCAACTACGGATGCTAATTCTGGCAAGCTTGTCATGTTCTCGGGAGAGCCCGACTTTAGTACCGGTGCACATGCCCTCCTTAACAAGGATTGCGAGCTTGGCCGTGGGGGATTTGGAGCGGTTTACCAGACTGTTCTTCGTGATGGGCATCCGGTTGCAATAAAAAAGCTCACCGTTTCAAGTCTTGTCAAATCTCAAGAAGAGTTTGAAAGGGAGGTTAAGAAGTTGGGGAAGGTTAGGCACCAAAATCTTGTGGCTCTAGAAGGTTATTACTGGACACCATCTCTACAGCTCCTCATATATGAATTTGTTTCTGGAGGGAGTTTGTATAAACAGCTTCATGAAGGATTGGGTGGAAACATCCTCTCATGGAATGAAAGGTTCAACATAATCCTTGGAACCGCAAAAAGCTTGGCACATTTGCACCAAATGAACATCATCCACTACAATATAAAATCAAGCAATGTACTGATTGATAGTTCAGGCGAACCTAAAGTTGGAGATTTTGGCCTAGCAAGATTGTTACCAATGCTTGATCGGTACGTGTTGAGCAGCAAGATACAGAGCGCACTCGGATACATGGCACCCGAGTTTGCCTGCAAAACAGTTAAGATAACAGAGAAATGTGATGTGTATGGGTTTGGAGTTCTGGTTCTTGAGGTGGTAACTGGGAAGAGACCTGTAGAGTACATGGAAGACGATGTGGTGGTACTCTGCGACATGGTTCGACGGGCGCTGGAAGAAGGTCGGGTAGAGGAATGCATTGATGGGAGGCTCCAGAGGAATTTTCCATCAGAGGAGGCCATACCAGTAGTGAAACTAGGCTTGATTTGCACTTCTCAGGTGCCATCAAACCGACCTGATATGGCAGAGGTTGTTAATATATTAGAGCTTATCAGATGTCCATCAGAAGGCCAAGAAGAATTGGGATAA 2895 44.15 MKRLLGLFFLFVVVPVLVRSLNPPLNDDVLGLIVFKADIEDPKGKLASWNEDDDNPCNWVGVKCNPRSNRVVELNLDGFSLNGRLGRGLLQLQFLRKLSLSNNNLTGNLSPNNARFENLRVVDLSGNGFHGMIPDDFFRQCGSLRVISLAKNKFSGKIPESLGSCSSLAAVNLSSNQFSGSLPSGIWSLTGLRSLDLSDNVLEGEIPPEVKGMNNLRAINLGKNRFSGQIPDGIGSCLLLRSVDLSENSFSGDVPATMQKLSLCSTLNLRRNSFEGKVPEWIGGMDGLEILDLSGNRFSGPVPSSFGNLQKLKVLNFSENGLTGSLAESILPSQNLSAMEPSRGSLTGVLPAWILKLGSQNVLPSDIKRSSLSTTVGKALVNLQVLDLSHNALSGEISPDIGILSNLQVLNLCKNSFVGTIPESIGGLKALDFLDLSENQLNGTIPETLGGDISLKEVRLEKNLLEGEVPKSIGNCSSLVTLDISENRLTGSIPAELSQLINLQIVDLSTNNLSGALPKQLANLPNLLLFNISHNNLQGELPAGGFFNTISPSSVAGNPSICGSIVKKSCPGVLPKPIVLNPNSSSDSGSPSLPSTLGHKRIILSISALIAIGAAAVILVGVVAITVINLHVRSSANRPEAAIMFSGGDDFSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQEEFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLGGNILSWNERFNIILGTAKSLAHLHQMNIIHYNIKSSNVLIDSSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRALEEGRVEECIDGRLQRNFPSEEAIPVVKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEELG 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7911601 7914716 + CrPI670011_11g010470.1 Cre11g1047 512792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1047 964 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524(InterPro)
Cre11g1047 964 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 26 304 - -
Cre11g1047 964 Gene3D Transferase(Phosphotransferase) domain 1 758 962 - -
Cre11g1047 964 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 675 757 - -
Cre11g1047 964 PRINTS Leucine-rich repeat signature 192 205 - -
Cre11g1047 964 PRINTS Leucine-rich repeat signature 380 393 - -
Cre11g1047 964 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Cre11g1047 964 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515(InterPro)
Cre11g1047 964 Pfam Leucine rich repeat 240 298 IPR001611 GO:0005515(InterPro)
Cre11g1047 964 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515(InterPro)
Cre11g1047 964 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 305 574 - -
Cre11g1047 964 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 758 959 - -
Cre11g1047 964 SUPERFAMILY RNI-like 267 548 - -
Cre11g1047 964 SUPERFAMILY Protein kinase-like (PK-like) 684 954 IPR011009 -
Cre11g1047 964 Pfam Leucine Rich Repeat 192 212 IPR001611 GO:0005515(InterPro)
Cre11g1047 964 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515(InterPro)
Cre11g1047 964 Pfam Leucine Rich Repeat 478 500 IPR001611 GO:0005515(InterPro)
Cre11g1047 964 Pfam Leucine Rich Repeat 502 524 IPR001611 GO:0005515(InterPro)
Cre11g1047 964 Pfam Leucine Rich Repeat 95 111 IPR001611 GO:0005515(InterPro)
Cre11g1047 964 SMART LRR_typ_2 213 237 IPR003591 -
Cre11g1047 964 SMART LRR_typ_2 500 523 IPR003591 -
Cre11g1047 964 SMART LRR_typ_2 380 404 IPR003591 -
Cre11g1047 964 SMART LRR_typ_2 189 212 IPR003591 -
Cre11g1047 964 SMART LRR_typ_2 285 308 IPR003591 -
Cre11g1047 964 SMART LRR_typ_2 116 140 IPR003591 -
Cre11g1047 964 SMART LRR_typ_2 428 452 IPR003591 -
Cre11g1047 964 SMART LRR_typ_2 309 333 IPR003591 -
Cre11g1047 964 SMART LRR_typ_2 524 548 IPR003591 -
Cre11g1047 964 Pfam Protein tyrosine and serine/threonine kinase 683 949 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre11g1047 964 Gene3D Ribonuclease Inhibitor 26 303 IPR032675 -
Cre11g1047 964 PANTHER OS05G0588300 PROTEIN 305 449 IPR050994 -
Cre11g1047 964 Gene3D Phosphorylase Kinase; domain 1 674 757 - -
Cre11g1047 964 Gene3D Ribonuclease Inhibitor 304 574 IPR032675 -
Cre11g1047 964 SUPERFAMILY L domain-like 44 359 - -
Cre11g1047 964 CDD STKc_IRAK 687 953 - -
Cre11g1047 964 ProSiteProfiles Protein kinase domain profile. 681 953 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g1047 Cre-Chr11:7911601 Cre05g0215 Cre-Chr5:2097555 7.40E-50 dispersed
Cre07g1931 Cre-Chr7:34763393 Cre11g1047 Cre-Chr11:7911601 7.80E-26 transposed
Cre10g0574 Cre-Chr10:5262899 Cre11g1047 Cre-Chr11:7911601 5.30E-87 transposed
Cre10g2379 Cre-Chr10:37855876 Cre11g1047 Cre-Chr11:7911601 6.00E-185 wgd
Cre11g1047 Cre-Chr11:7911601 Cre07g0900 Cre-Chr7:8102541 9.90E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64542 PF00069 Pkinase 3.00E-41 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1047 - - - 0.0