Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1052 ATGGCCATCTCACCATTCTCTTCTCTTTCAATCTTCTTCCTTATTTTCCTTCCTGCAATCTCAGCCGATTACGGCCACGCCACCTTCTATGGCGGCGGAGACGCTTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGTCAAGGATATGGGACGAACACGGCGGCGCTAAGTACTGCTCTGTTCAACAATGGGCTGAGCTGTGGCTCTTGTTATGAAATCACTTGCAATAGTGATCCTAAATGGTGTCTTCCTGGAAAAATCATCGTCACTGCCACTAATTTCTGTCCACCAAACTTTGCTCTGTCCAACGACAATGGCGGCTGGTGCAACCCTCCTCTGCAGCACTTCGACTTGGCGGAGCCGGCTTTTCTCCAAATCGCTCAATACCGTGCTGGAATCGTCCCTGTTTCCTTCCAAAGAGTACCATGTATGAAGAAGGGAGGAATCAGATTCACCATTAACGGACATTCATACTTCAACTTGGTTCTGATCACCAACGTGGGCGGCGCCGGCGACGTTCACTCAGTGTCGATCAAAGGTTCGAAAACAGGATGGCAAGCCATGTCCAGAAATTGGGGGCAGAATTGGCAGAGCAACAATTACTTGAACGGACAGAGTCTCTCTTTCCAAGTCACCACCAGCGACGGCCGTACCGTCACCAGCTACGACGCCGTTCCGGCCAACTGGCAGTTTGGCCAGACGTTTGAGGGAGGCCAATTCTAA 735 51.16 MAISPFSSLSIFFLIFLPAISADYGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEITCNSDPKWCLPGKIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFQRVPCMKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTVTSYDAVPANWQFGQTFEGGQF 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7965287 7966228 + CrPI670011_11g010520.1 Cre11g1052 512797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1052 244 Pfam Lytic transglycolase 57 142 IPR009009 -
Cre11g1052 244 SMART dpbb_1 57 142 IPR007112 -
Cre11g1052 244 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Cre11g1052 244 CDD DPBB_EXPA_N 25 147 - -
Cre11g1052 244 Gene3D - 19 148 IPR036908 -
Cre11g1052 244 PRINTS Expansin signature 91 101 IPR002963 GO:0009664(InterPro)
Cre11g1052 244 PRINTS Expansin signature 163 184 IPR002963 GO:0009664(InterPro)
Cre11g1052 244 PRINTS Expansin signature 52 66 IPR002963 GO:0009664(InterPro)
Cre11g1052 244 PRINTS Expansin signature 79 90 IPR002963 GO:0009664(InterPro)
Cre11g1052 244 PRINTS Expansin signature 198 219 IPR002963 GO:0009664(InterPro)
Cre11g1052 244 PRINTS Expansin signature 127 140 IPR002963 GO:0009664(InterPro)
Cre11g1052 244 PRINTS Expansin signature 227 243 IPR002963 GO:0009664(InterPro)
Cre11g1052 244 PRINTS Expansin signature 110 127 IPR002963 GO:0009664(InterPro)
Cre11g1052 244 PRINTS Expansin signature 151 163 IPR002963 GO:0009664(InterPro)
Cre11g1052 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 152 IPR007112 -
Cre11g1052 244 Gene3D - 151 244 IPR036749 -
Cre11g1052 244 FunFam Expansin 152 244 - -
Cre11g1052 244 PRINTS Expansin/Lol pI family signature 21 36 IPR007118 GO:0005576(InterPro)
Cre11g1052 244 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576(InterPro)
Cre11g1052 244 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Cre11g1052 244 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576(InterPro)
Cre11g1052 244 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Cre11g1052 244 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Cre11g1052 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Cre11g1052 244 PANTHER EXPANSIN-A15 12 244 IPR002963 GO:0009664(InterPro)
Cre11g1052 244 SUPERFAMILY Barwin-like endoglucanases 12 170 IPR036908 -
Cre11g1052 244 FunFam Expansin 19 148 - -
Cre11g1052 244 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2585 Cre-Chr5:37029535 Cre11g1052 Cre-Chr11:7965287 6.60E-112 dispersed
Cre07g1084 Cre-Chr7:17503284 Cre11g1052 Cre-Chr11:7965287 9.90E-74 dispersed
Cre08g1360 Cre-Chr8:26648405 Cre11g1052 Cre-Chr11:7965287 1.40E-93 dispersed
Cre09g1686 Cre-Chr9:34701851 Cre11g1052 Cre-Chr11:7965287 1.80E-70 dispersed
Cre09g2195 Cre-Chr9:41044988 Cre11g1052 Cre-Chr11:7965287 4.30E-69 dispersed
Cre10g0585 Cre-Chr10:5344163 Cre11g1052 Cre-Chr11:7965287 1.60E-68 dispersed
Cre11g1052 Cre-Chr11:7965287 Cre11g1406 Cre-Chr11:18373768 5.90E-105 dispersed
Cre11g1052 Cre-Chr11:7965287 Cre07g0895 Cre-Chr7:7955803 5.30E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1052 - - - 0.0