Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1062 ATGTCAAGAGAAAGCAGAGAATTGCAACAGGTCGATGAGACCGGGAAGAAAATAAAGAGGGAAATTGATCAAAGTTTTTATGATCCATTAATGGGAAGAAGACATATTTTAAGTCCAAGTACTGGGACGACATTGAATACAATAACGCCATGTGCAGCTTGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCATTTTCTCCATATTTTTCTCCACATGAACCCCAAAAATTTGCTTCGGTTCATAAGGTTTTTGGTGCAAGCAACGTGGCTAAGATGCTAATGGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCTGTGTATGGTTGCATGGGAGTCATTTCTGCTCTCCAACACCAACTTCATACTTTACAATCTGACCTCAATTCCATCAGAGCTCAGATTTTCAACTTCAAATTTACACAACATAATAATTCACACATTCCTAATTTCATTTCCGCCGCCGCAACCCCGCCTGCAGCCCCGCCAACTCCGCCACATTCTCAGCCGCCTCCCCTCTCTCTTCCGCCCCCTCTTCCTTCCTCCTCTTCCATCTTTTCCTCTCCTATTATCACTACTACTACTGCTGCCCCTGAATTAATTAACCCCATCTCAACAACTCAACATATTTCCTACTTTGGTTAA 690 42.9 MSRESRELQQVDETGKKIKREIDQSFYDPLMGRRHILSPSTGTTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRAQIFNFKFTQHNNSHIPNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTTTAAPELINPISTTQHISYFG 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8056520 8058996 + CrPI670011_11g010620.1 Cre11g1062 512807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1062 229 ProSiteProfiles LOB domain profile. 49 150 IPR004883 -
Cre11g1062 229 MobiDBLite consensus disorder prediction 167 194 - -
Cre11g1062 229 Coils Coil 129 149 - -
Cre11g1062 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 48 174 - -
Cre11g1062 229 MobiDBLite consensus disorder prediction 171 194 - -
Cre11g1062 229 Pfam Lateral organ boundaries (LOB) domain 50 147 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g1062 Cre-Chr11:8056520 Cre11g1551 Cre-Chr11:24820525 6.10E-35 dispersed
Cre08g1158 Cre-Chr8:24795796 Cre11g1062 Cre-Chr11:8056520 2.70E-10 transposed
Cre11g1062 Cre-Chr11:8056520 Cre07g0881 Cre-Chr7:7515089 2.30E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54671 PF03195 LOB 1.90E-40 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1062 - - - 0.0