Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g1062 | ATGTCAAGAGAAAGCAGAGAATTGCAACAGGTCGATGAGACCGGGAAGAAAATAAAGAGGGAAATTGATCAAAGTTTTTATGATCCATTAATGGGAAGAAGACATATTTTAAGTCCAAGTACTGGGACGACATTGAATACAATAACGCCATGTGCAGCTTGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCATTTTCTCCATATTTTTCTCCACATGAACCCCAAAAATTTGCTTCGGTTCATAAGGTTTTTGGTGCAAGCAACGTGGCTAAGATGCTAATGGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCTGTGTATGGTTGCATGGGAGTCATTTCTGCTCTCCAACACCAACTTCATACTTTACAATCTGACCTCAATTCCATCAGAGCTCAGATTTTCAACTTCAAATTTACACAACATAATAATTCACACATTCCTAATTTCATTTCCGCCGCCGCAACCCCGCCTGCAGCCCCGCCAACTCCGCCACATTCTCAGCCGCCTCCCCTCTCTCTTCCGCCCCCTCTTCCTTCCTCCTCTTCCATCTTTTCCTCTCCTATTATCACTACTACTACTGCTGCCCCTGAATTAATTAACCCCATCTCAACAACTCAACATATTTCCTACTTTGGTTAA | 690 | 42.9 | MSRESRELQQVDETGKKIKREIDQSFYDPLMGRRHILSPSTGTTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRAQIFNFKFTQHNNSHIPNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTTTAAPELINPISTTQHISYFG | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8056520 | 8058996 | + | CrPI670011_11g010620.1 | Cre11g1062 | 512807 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g1062 | 229 | ProSiteProfiles | LOB domain profile. | 49 | 150 | IPR004883 | - | |
Cre11g1062 | 229 | MobiDBLite | consensus disorder prediction | 167 | 194 | - | - | |
Cre11g1062 | 229 | Coils | Coil | 129 | 149 | - | - | |
Cre11g1062 | 229 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 48 | 174 | - | - | |
Cre11g1062 | 229 | MobiDBLite | consensus disorder prediction | 171 | 194 | - | - | |
Cre11g1062 | 229 | Pfam | Lateral organ boundaries (LOB) domain | 50 | 147 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre11g1062 | Cre-Chr11:8056520 | Cre11g1551 | Cre-Chr11:24820525 | 6.10E-35 | dispersed | |
Cre08g1158 | Cre-Chr8:24795796 | Cre11g1062 | Cre-Chr11:8056520 | 2.70E-10 | transposed | |
Cre11g1062 | Cre-Chr11:8056520 | Cre07g0881 | Cre-Chr7:7515089 | 2.30E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54671 | PF03195 | LOB | 1.90E-40 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g1062 | - | - | - | 0.0 |