Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1080 ATGACACCAGAGACAATTGAGAGGAAGAGGAAGTCACGGAGTAGACGAGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTTTTGATTCTTGTAATGATGGAAGCAAGCCAATTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGTAAGGGAGGACCCTTGAATTCACATTGCAATTACAGAGGTGTGAGACAGAGGACTTGGGGAAAATGGGTTGCAGAGATTCGTGAACCCAATAGGGGGAGTAGGCTTTGGCTTGGTACTTTCCCCACTGCCATTGAAGCTGCTCTTGCCTACGACGAGGCTGCGAGGACGATGTACGGTCAGAGTGCTCGTTTAAACCTTCCCAACATTAGAAACAGAGGGCAACTACAAGGGATTCTTCTGGAGGATTACTTGGGCCTACGTAACTCGGATTCTTCAACTGCTACTTCAACATGTTCTGAATCGACGACCACGACGTCGAACCAATCTGAGGTCTGCGTGCCTGAGGAGTTCGCAAAGAGGCCACAGCTTGTGCCCTCAAACATTAAGATTGAAGATGGAGAAGGTGAATCGAGGACAGGGGATCACAGTGATGGCACTGCGACACCGATGCGCTTAGAGAATGAAGTGAAACATGAGGATTGCAATGATCGGGCAGCTGTATTAGGGACTGAGGTTCCTAGTTTGGATCAGTCGCAGAACTTTCCAATGGATGAAATGTTCGAGCCGAGGACCGGGAATCAGGCTGATCATATGGCGATGCCTATGAGCTTAGAGAAGCAAGTGAAGGATGAAGATCTCGATGCTGTATATCGTGATTGGAGCAACGACCAAGCAGTCTTACCAGAAGCCGGGATTTCTAGTCTGAATAATTTACAGAACTTTCAAATAGATGAAATGTTTGATGTGGAAGAGCTCCTAAGCCTGATAAGTAGTGATTCCTTGTATGATCCAACAACAACAAACATCTTGAAGGGAAATGCAGATGGTTATACTAACGTAGCGCCTTCACAAGTTAGCAATCTTGGGTCTGAGAAGCCGTCAAGTTGGTCATACCAATTCCAAAATCCCGGAGCGAAGCTGCTCGGAAGTCTCCAACAGACGGAGCAAGCGCCGGCGGACGTAGACTATGGATTTGATTTCTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCCGCAGCAGATGATTGTGTTAGATACCTGAACGAGATGGGTGATTTAGGTTTCTAA 1248 47.04 MTPETIERKRKSRSRRDRSTVAETLAKWKAYNECFDSCNDGSKPIRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGQSARLNLPNIRNRGQLQGILLEDYLGLRNSDSSTATSTCSESTTTTSNQSEVCVPEEFAKRPQLVPSNIKIEDGEGESRTGDHSDGTATPMRLENEVKHEDCNDRAAVLGTEVPSLDQSQNFPMDEMFEPRTGNQADHMAMPMSLEKQVKDEDLDAVYRDWSNDQAVLPEAGISSLNNLQNFQIDEMFDVEELLSLISSDSLYDPTTTNILKGNADGYTNVAPSQVSNLGSEKPSSWSYQFQNPGAKLLGSLQQTEQAPADVDYGFDFLKQGREEDLNAAADDCVRYLNEMGDLGF 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8259520 8261339 + CrPI670011_11g010800.1 Cre11g1080 512825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1080 415 SMART rav1_2 70 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1080 415 CDD AP2 69 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1080 415 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 318 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cre11g1080 415 Pfam AP2 domain 70 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1080 415 MobiDBLite consensus disorder prediction 150 171 - -
Cre11g1080 415 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1080 415 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1080 415 Gene3D AP2/ERF domain 70 128 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1080 415 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1080 415 SUPERFAMILY DNA-binding domain 70 127 IPR016177 GO:0003677(InterPro)
Cre11g1080 415 MobiDBLite consensus disorder prediction 189 208 - -
Cre11g1080 415 FunFam Ethylene-responsive transcription factor 2 69 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2034 Cre-Chr5:32346683 Cre11g1080 Cre-Chr11:8259520 2.10E-30 dispersed
Cre08g1414 Cre-Chr8:27121091 Cre11g1080 Cre-Chr11:8259520 2.40E-30 dispersed
Cre10g1831 Cre-Chr10:32862276 Cre11g1080 Cre-Chr11:8259520 2.30E-25 dispersed
Cre11g1080 Cre-Chr11:8259520 Cre11g1954 Cre-Chr11:31358313 3.40E-20 dispersed
Cre11g1080 Cre-Chr11:8259520 Cre11g1089 Cre-Chr11:8352329 1.90E-18 proximal
Cre02g1424 Cre-Chr2:24861865 Cre11g1080 Cre-Chr11:8259520 2.30E-49 transposed
Cre11g1080 Cre-Chr11:8259520 Cre04g0769 Cre-Chr4:26258651 2.10E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54673 PF00847 AP2 1.00E-14 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1080 K09286 - csv:101215431 635.95