Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g1080 | ATGACACCAGAGACAATTGAGAGGAAGAGGAAGTCACGGAGTAGACGAGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTTTTGATTCTTGTAATGATGGAAGCAAGCCAATTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGTAAGGGAGGACCCTTGAATTCACATTGCAATTACAGAGGTGTGAGACAGAGGACTTGGGGAAAATGGGTTGCAGAGATTCGTGAACCCAATAGGGGGAGTAGGCTTTGGCTTGGTACTTTCCCCACTGCCATTGAAGCTGCTCTTGCCTACGACGAGGCTGCGAGGACGATGTACGGTCAGAGTGCTCGTTTAAACCTTCCCAACATTAGAAACAGAGGGCAACTACAAGGGATTCTTCTGGAGGATTACTTGGGCCTACGTAACTCGGATTCTTCAACTGCTACTTCAACATGTTCTGAATCGACGACCACGACGTCGAACCAATCTGAGGTCTGCGTGCCTGAGGAGTTCGCAAAGAGGCCACAGCTTGTGCCCTCAAACATTAAGATTGAAGATGGAGAAGGTGAATCGAGGACAGGGGATCACAGTGATGGCACTGCGACACCGATGCGCTTAGAGAATGAAGTGAAACATGAGGATTGCAATGATCGGGCAGCTGTATTAGGGACTGAGGTTCCTAGTTTGGATCAGTCGCAGAACTTTCCAATGGATGAAATGTTCGAGCCGAGGACCGGGAATCAGGCTGATCATATGGCGATGCCTATGAGCTTAGAGAAGCAAGTGAAGGATGAAGATCTCGATGCTGTATATCGTGATTGGAGCAACGACCAAGCAGTCTTACCAGAAGCCGGGATTTCTAGTCTGAATAATTTACAGAACTTTCAAATAGATGAAATGTTTGATGTGGAAGAGCTCCTAAGCCTGATAAGTAGTGATTCCTTGTATGATCCAACAACAACAAACATCTTGAAGGGAAATGCAGATGGTTATACTAACGTAGCGCCTTCACAAGTTAGCAATCTTGGGTCTGAGAAGCCGTCAAGTTGGTCATACCAATTCCAAAATCCCGGAGCGAAGCTGCTCGGAAGTCTCCAACAGACGGAGCAAGCGCCGGCGGACGTAGACTATGGATTTGATTTCTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCCGCAGCAGATGATTGTGTTAGATACCTGAACGAGATGGGTGATTTAGGTTTCTAA | 1248 | 47.04 | MTPETIERKRKSRSRRDRSTVAETLAKWKAYNECFDSCNDGSKPIRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGQSARLNLPNIRNRGQLQGILLEDYLGLRNSDSSTATSTCSESTTTTSNQSEVCVPEEFAKRPQLVPSNIKIEDGEGESRTGDHSDGTATPMRLENEVKHEDCNDRAAVLGTEVPSLDQSQNFPMDEMFEPRTGNQADHMAMPMSLEKQVKDEDLDAVYRDWSNDQAVLPEAGISSLNNLQNFQIDEMFDVEELLSLISSDSLYDPTTTNILKGNADGYTNVAPSQVSNLGSEKPSSWSYQFQNPGAKLLGSLQQTEQAPADVDYGFDFLKQGREEDLNAAADDCVRYLNEMGDLGF | 415 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8259520 | 8261339 | + | CrPI670011_11g010800.1 | Cre11g1080 | 512825 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g1080 | 415 | SMART | rav1_2 | 70 | 133 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1080 | 415 | CDD | AP2 | 69 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1080 | 415 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 7 | 318 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Cre11g1080 | 415 | Pfam | AP2 domain | 70 | 119 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1080 | 415 | MobiDBLite | consensus disorder prediction | 150 | 171 | - | - | |
Cre11g1080 | 415 | PRINTS | Ethylene responsive element binding protein signature | 93 | 109 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1080 | 415 | PRINTS | Ethylene responsive element binding protein signature | 71 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1080 | 415 | Gene3D | AP2/ERF domain | 70 | 128 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1080 | 415 | ProSiteProfiles | AP2/ERF domain profile. | 70 | 127 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1080 | 415 | SUPERFAMILY | DNA-binding domain | 70 | 127 | IPR016177 | GO:0003677(InterPro) | |
Cre11g1080 | 415 | MobiDBLite | consensus disorder prediction | 189 | 208 | - | - | |
Cre11g1080 | 415 | FunFam | Ethylene-responsive transcription factor 2 | 69 | 128 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g2034 | Cre-Chr5:32346683 | Cre11g1080 | Cre-Chr11:8259520 | 2.10E-30 | dispersed | |
Cre08g1414 | Cre-Chr8:27121091 | Cre11g1080 | Cre-Chr11:8259520 | 2.40E-30 | dispersed | |
Cre10g1831 | Cre-Chr10:32862276 | Cre11g1080 | Cre-Chr11:8259520 | 2.30E-25 | dispersed | |
Cre11g1080 | Cre-Chr11:8259520 | Cre11g1954 | Cre-Chr11:31358313 | 3.40E-20 | dispersed | |
Cre11g1080 | Cre-Chr11:8259520 | Cre11g1089 | Cre-Chr11:8352329 | 1.90E-18 | proximal | |
Cre02g1424 | Cre-Chr2:24861865 | Cre11g1080 | Cre-Chr11:8259520 | 2.30E-49 | transposed | |
Cre11g1080 | Cre-Chr11:8259520 | Cre04g0769 | Cre-Chr4:26258651 | 2.10E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54673 | PF00847 | AP2 | 1.00E-14 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g1080 | K09286 | - | csv:101215431 | 635.95 |