Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1088 ATGAGAGGTTGGCATGAGACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAAAGAAGATGCATTCCCACTTGTATATTTGCTCCTTATTTTAGGTCTGATGAGCCAAAGAAATTTGCCAAAGTTCATAAGGTTTTTGGGGCAAGTAATGTGAGTAAAATTCTGACTGAGGTTCCTGAGGAGCAGAGAGAAGACACTGTCAATTCTTTGGCTTATGAAGCTGAGGCCAGGCTGAGGGATCCTGTTTATGGCTGCATCGGCGCCATAGCTTTGTTGCAAACAAAAATGGTGGAGCTTCAACATGATCTTGCCCTTGCCAAAGCTCGTCTTGCTCGTTATGCTAATACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTAGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTCAGTATCTCTTCAGGCCAGAGCTCTTCTGATATCACCCAATATGGATATTTATGTGACTTCTCTCATTTTCCTTATCCATTTAAAGCTTGA 516 40.7 MRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYANTSSSSSSSSSSSLENCVVNMSYGGFSISSGQSSSDITQYGYLCDFSHFPYPFKA 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8336297 8336812 + CrPI670011_11g010880.1 Cre11g1088 512833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1088 171 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Cre11g1088 171 Coils Coil 91 118 - -
Cre11g1088 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 122 - -
Cre11g1088 171 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g1088 Cre-Chr11:8336297 Cre11g1551 Cre-Chr11:24820525 4.80E-37 dispersed
Cre11g1088 Cre-Chr11:8336297 Cre10g1536 Cre-Chr10:29334984 4.40E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54674 PF03195 LOB 1.40E-38 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1088 - - - 0.0