Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1102 ATGTATTTTCTTCTACTCAGCCCTTTTTTACCCATACCAACTCTTGGAGGAAATGACAGAGATAGGCTTGCATTGCTTTCTTTCAAATCTGAGATAATTGTTGACCCATTTGGCTTATTCACCTCTTTCACCTCTTGGAATGATTCTGTTCATTTTTGCAATTGGGAAGGGGAGATTCCTACAGCCATATCCAATTGCTCAGAGCTTCAATACATTGGATTGTTAAGAAACAATCTAATTGGCATGCTGCCAATGGAACTTGGGTTGTTAACCAAGCTTCAAGTATTTGAGTTGTCTTCCAATCAACTGTTTGGAGAAATACCTGAAGCATTTGGAAATCTGTCATCTTTTAGGGACTTCTGGGCCACTCGGAATAATTTCCATGGCAGTATTCCTACTAGTTTTGGGCAGTTGAAAAATTTAACAGTTCTTTCTATTGGGGCAAACAATCTGACAGGCACTATTCCTTCTTCAATCTACAATCTTTCATCCATAAGAATCTTTTCACTTCCTGTAAACCAACTTGAGGGGAAAGTGCCTAGCTTGGCGAACATGCGAGATCTTGAGGAACTTACACTTTTTGAAAACAATCTTGGATTTAGGGATGATCATGACTTGAATTTTCTATTCTCTCTTGTTAATTGCTCCAATTTGAGTATTTTAGTCATCAGCGGCAACAATTTTTGTGGGACACTACCAGAGTATATAAGCAACTTCTCTACAAAGCTTACGGTTATAGGAATTGGTAGGAATCATATTCATGGAACAATTCCAACTGATATTGGCAATGTCTACCAATTAGTGGCATTAGGACTGGAGACAAACCAACTGACTGGTTCTATACCAAACTCACTGGGGAAACTAAATAAACTATATGCTTTGTTTTTAAATGGAAACAAACTCTCAGGGGCAATCCCCCAATCTCTTGGAAATTTGCCTGTACTTGGGAGATGCAATCTGAGGTTAAACAACTTAACTGGAGCCATACCACCAAGTCTAGGAGAAATCCAAAATTTGCTAATGCTGGCACTCTTTCAGAACCAACTATCTGGTGGAATACCAAACGAATTGTTGAGTATATCATCTTTATCAATTGCTCTAGATCTGTCTGAGAATTATTTGACTGGATCCATTCCATTGGAAGTGGGCAAGTTGGTAAATCTTGGCGATTTGCATAATTCTGATAACAGGTTAACTGGGGTTATTCCCTCTACTCTCAGTGCTTGCACGAGCTTAGAAGATCTACACTTGGATGGAAATTTCCTTGAGGGCCCTATACCTCAATCGAGTTCTTTGAGAGGTATCGAAGAACTAGACCTTTCTCGCAACAATTTGTCAGGGAAAATTCCATCTTATTTGCAAGAGTTTAAAGTTTTGAGCTATTTAAATTTAGCTTTCAACAATTTGGAAGTTGGTGGTGGATTGGTGGGAAGCCTTCTAGTCATCTGTTGTCTGCTCTTTTTTCGGTTAAGGAAGAAAAGAAGTACGTCAGATTTGAGTCCATCATTGAAGGCTCCCTATTTTGTTGTATCTTATAATGACCTCCTCAAGGCCACCAATGGCTTTTCTCCTAACAATCTAATTGGAGTTGGTGGTTATGGGTCCGTCTATAAAGGAATTCTTAGTCAAGATGAAAGTGTTGTTGCAGTTAAAGTGTTCAACCTTCAACATAGGGGAGCTTCAAAGAGTTTTCTAGCAGAATGTGAAGCTCTTAAAAGCATTAGACATCGCAATCTTGTTCGAATTCTTTCTGCTTGCTCGGGAGTCGATTTTCAAGGTAACGATTTTATAGCATTGGTATTTGATTTCATGGTTAATGGGAGCCTAGAGAAGTGGTTGCATCCAGTTGATAATTTGAACCAAGAAGAGGAGAAAAGGTATTTAAATATTATGCAAAGGCTAAATATTGCCATTGGTGTGGCTAGTGCTCTAGATTATCTGCATAATGGTAGCCGCATACCAATAGCTCACTGTGACTTAAAGCCAAGCAATGTTCTTTCGGATGCGAACATGACTGCTCATGTTGGAGATTTTGGATTGGCAAAATTTATGGTTGGAACTTCCTTCCAGAACAAATCAACTGAAAGTGGATCCATCAGCATACGAGGCACGGTTGGATATGCTCCTCCAGAGTATGCCATGGGAAGCAAGGTTTCGACACATGGTGATGTGTACAGTTATGGCATCCTATTGTTGGAGATGTTCACCGGAAAGAGTCCAACTGATAATATGTTCAAAGATGGCTTAACCTTGAACAACTACGTTCTTACAGTCTTACCTGAAAGGGTACAAGAAATAACAGACCCAACAATGGGCCTTCAGGCACTGAATGGAATAAGAAACAATAATAACATGCTTAACAATAACCATGTTCTTGAGGCTTTACCCGATTGGTTAGAACAAATAGGAGATCCAAAATTGAGCCTTCAAGAACGGGAGGGAACAAGAAACCAAAATCTTATGGTTCAAGCTAATCAATCTCTCAGAATTAAAGAGTGCTTGTTTTCAATTTTCAGCACAGGAGTTGTATGTTCTGCCCAAATGCCTAGTGAGAGAATGAATATCAGTGATGTTGTTTCCCAACTACGCCTTACAAGAGAAAAATTTTCATAG 2613 39.19 MYFLLLSPFLPIPTLGGNDRDRLALLSFKSEIIVDPFGLFTSFTSWNDSVHFCNWEGEIPTAISNCSELQYIGLLRNNLIGMLPMELGLLTKLQVFELSSNQLFGEIPEAFGNLSSFRDFWATRNNFHGSIPTSFGQLKNLTVLSIGANNLTGTIPSSIYNLSSIRIFSLPVNQLEGKVPSLANMRDLEELTLFENNLGFRDDHDLNFLFSLVNCSNLSILVISGNNFCGTLPEYISNFSTKLTVIGIGRNHIHGTIPTDIGNVYQLVALGLETNQLTGSIPNSLGKLNKLYALFLNGNKLSGAIPQSLGNLPVLGRCNLRLNNLTGAIPPSLGEIQNLLMLALFQNQLSGGIPNELLSISSLSIALDLSENYLTGSIPLEVGKLVNLGDLHNSDNRLTGVIPSTLSACTSLEDLHLDGNFLEGPIPQSSSLRGIEELDLSRNNLSGKIPSYLQEFKVLSYLNLAFNNLEVGGGLVGSLLVICCLLFFRLRKKRSTSDLSPSLKAPYFVVSYNDLLKATNGFSPNNLIGVGGYGSVYKGILSQDESVVAVKVFNLQHRGASKSFLAECEALKSIRHRNLVRILSACSGVDFQGNDFIALVFDFMVNGSLEKWLHPVDNLNQEEEKRYLNIMQRLNIAIGVASALDYLHNGSRIPIAHCDLKPSNVLSDANMTAHVGDFGLAKFMVGTSFQNKSTESGSISIRGTVGYAPPEYAMGSKVSTHGDVYSYGILLLEMFTGKSPTDNMFKDGLTLNNYVLTVLPERVQEITDPTMGLQALNGIRNNNNMLNNNHVLEALPDWLEQIGDPKLSLQEREGTRNQNLMVQANQSLRIKECLFSIFSTGVVCSAQMPSERMNISDVVSQLRLTREKFS 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8506121 8509471 - CrPI670011_11g011020.1 Cre11g1102 512847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1102 870 SUPERFAMILY L domain-like 241 471 - -
Cre11g1102 870 SUPERFAMILY RNI-like 51 306 - -
Cre11g1102 870 ProSitePatterns Protein kinases ATP-binding region signature. 528 551 IPR017441 GO:0005524(InterPro)
Cre11g1102 870 PANTHER OS04G0122200 PROTEIN 478 862 IPR051809 -
Cre11g1102 870 FunFam LRR receptor-like serine/threonine-protein kinase EFR 204 476 - -
Cre11g1102 870 Gene3D Phosphorylase Kinase; domain 1 503 603 - -
Cre11g1102 870 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 604 792 - -
Cre11g1102 870 Gene3D Transferase(Phosphotransferase) domain 1 604 870 - -
Cre11g1102 870 FunFam LRR receptor-like serine/threonine-protein kinase EFR 493 603 - -
Cre11g1102 870 Pfam Leucine rich repeat N-terminal domain 19 57 IPR013210 -
Cre11g1102 870 Gene3D Ribonuclease Inhibitor 18 206 IPR032675 -
Cre11g1102 870 SUPERFAMILY Protein kinase-like (PK-like) 498 863 IPR011009 -
Cre11g1102 870 SMART serkin_6 522 864 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1102 870 ProSiteProfiles Protein kinase domain profile. 522 864 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1102 870 SMART LRR_sd22_2 90 116 - -
Cre11g1102 870 SMART LRR_sd22_2 138 164 - -
Cre11g1102 870 SMART LRR_sd22_2 288 314 - -
Cre11g1102 870 SMART LRR_sd22_2 432 455 - -
Cre11g1102 870 Pfam Protein kinase domain 525 744 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre11g1102 870 Gene3D Ribonuclease Inhibitor 207 484 IPR032675 -
Cre11g1102 870 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 109 200 - -
Cre11g1102 870 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Cre11g1102 870 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515(InterPro)
Cre11g1102 870 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Cre11g1102 870 Pfam Leucine Rich Repeat 291 312 IPR001611 GO:0005515(InterPro)
Cre11g1102 870 Pfam Leucine Rich Repeat 435 454 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g1102 Cre-Chr11:8506121 Cre11g1104 Cre-Chr11:8528687 1.20E-197 dispersed
Cre11g1102 Cre-Chr11:8506121 Cre11g1103 Cre-Chr11:8513437 5.20E-18 tandem
Cre10g2303 Cre-Chr10:37283586 Cre11g1102 Cre-Chr11:8506121 8.90E-85 wgd
Cre10g2340 Cre-Chr10:37577691 Cre11g1102 Cre-Chr11:8506121 4.20E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64544 PF00069 Pkinase 4.30E-40 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1102 - - - 0.0