Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g1124 | ATGACGACGATCCAAAACTCCCACGTTGTCGCAATGGATGTAGAAGGACAACAAGAACAAGAACGGCCTTGCCCACTTTCCGCCGCTCCCACTGACTCCTCACCGGCCTCCGATGATGTGCGGCGGTGCTCGGCCCAGTCCAGGGCTGACATTCTGGAGGAGGCGGTGGCGGAGAAAAGAAGGAGAACCTCTGTCTCGGAGTGCTCTGTCGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAGGGATTGCCGGATTTGTCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCTCATAAGCAGTGTGCTGAGGCTTGGTTCAAGATAAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTACGAAGCCGATTCGACAGAGCAGCGCAATGAGTCAAACGAAGCAACAACAGCAACCGCTACAGCTGCTGTCGTGATGCCACTGCACTCTACAGAGGTTCGGAACTTCTGGCAGGGCCACAGGTTTATATTATATAATTGGGCTTTGTATTGTTTTGAAGAAAACAGACAGGTTGATGTTCGAAAAGATGCTGAAACGGCTCAGCCTAGCTGGATTGGCCATCTTGTCTCTTGTCGTCTCATTGTGGATAATTCTCTGTTGAGATTCCGACATGTAGTTCCTTCTATACCAACAAAATCGGATTTGGGTCTCAAAATAATTAATGTTAAAAACTGA | 795 | 47.8 | MTTIQNSHVVAMDVEGQQEQERPCPLSAAPTDSSPASDDVRRCSAQSRADILEEAVAEKRRRTSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKQCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNESNEATTATATAAVVMPLHSTEVRNFWQGHRFILYNWALYCFEENRQVDVRKDAETAQPSWIGHLVSCRLIVDNSLLRFRHVVPSIPTKSDLGLKIINVKN | 264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8838846 | 8841935 | + | CrPI670011_11g011240.1 | Cre11g1124 | 512869 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g1124 | 264 | PANTHER | ZINC FINGER, RING-CH-TYPE | 16 | 198 | - | - | |
Cre11g1124 | 264 | Pfam | RING-variant domain | 92 | 143 | IPR011016 | GO:0008270(InterPro) | |
Cre11g1124 | 264 | SUPERFAMILY | RING/U-box | 89 | 146 | - | - | |
Cre11g1124 | 264 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 84 | 150 | IPR011016 | GO:0008270(InterPro) | |
Cre11g1124 | 264 | SMART | ringv_2 | 91 | 144 | IPR011016 | GO:0008270(InterPro) | |
Cre11g1124 | 264 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 153 | IPR013083 | - | |
Cre11g1124 | 264 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre11g1124 | Cre-Chr11:8838846 | Cre11g2080 | Cre-Chr11:32580622 | 8.60E-09 | dispersed | |
Cre04g0306 | Cre-Chr4:8610197 | Cre11g1124 | Cre-Chr11:8838846 | 5.30E-09 | transposed | |
Cre10g2275 | Cre-Chr10:37048316 | Cre11g1124 | Cre-Chr11:8838846 | 1.30E-44 | wgd | |
Cre11g1124 | Cre-Chr11:8838846 | Cre03g0418 | Cre-Chr3:2662191 | 7.50E-29 | wgd | |
Cre11g1124 | Cre-Chr11:8838846 | Cre04g0837 | Cre-Chr4:27091820 | 3.60E-31 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g1124 | - | - | - | 0.0 |