Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1124 ATGACGACGATCCAAAACTCCCACGTTGTCGCAATGGATGTAGAAGGACAACAAGAACAAGAACGGCCTTGCCCACTTTCCGCCGCTCCCACTGACTCCTCACCGGCCTCCGATGATGTGCGGCGGTGCTCGGCCCAGTCCAGGGCTGACATTCTGGAGGAGGCGGTGGCGGAGAAAAGAAGGAGAACCTCTGTCTCGGAGTGCTCTGTCGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAGGGATTGCCGGATTTGTCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCTCATAAGCAGTGTGCTGAGGCTTGGTTCAAGATAAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTACGAAGCCGATTCGACAGAGCAGCGCAATGAGTCAAACGAAGCAACAACAGCAACCGCTACAGCTGCTGTCGTGATGCCACTGCACTCTACAGAGGTTCGGAACTTCTGGCAGGGCCACAGGTTTATATTATATAATTGGGCTTTGTATTGTTTTGAAGAAAACAGACAGGTTGATGTTCGAAAAGATGCTGAAACGGCTCAGCCTAGCTGGATTGGCCATCTTGTCTCTTGTCGTCTCATTGTGGATAATTCTCTGTTGAGATTCCGACATGTAGTTCCTTCTATACCAACAAAATCGGATTTGGGTCTCAAAATAATTAATGTTAAAAACTGA 795 47.8 MTTIQNSHVVAMDVEGQQEQERPCPLSAAPTDSSPASDDVRRCSAQSRADILEEAVAEKRRRTSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKQCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNESNEATTATATAAVVMPLHSTEVRNFWQGHRFILYNWALYCFEENRQVDVRKDAETAQPSWIGHLVSCRLIVDNSLLRFRHVVPSIPTKSDLGLKIINVKN 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8838846 8841935 + CrPI670011_11g011240.1 Cre11g1124 512869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1124 264 PANTHER ZINC FINGER, RING-CH-TYPE 16 198 - -
Cre11g1124 264 Pfam RING-variant domain 92 143 IPR011016 GO:0008270(InterPro)
Cre11g1124 264 SUPERFAMILY RING/U-box 89 146 - -
Cre11g1124 264 ProSiteProfiles Zinc finger RING-CH-type profile. 84 150 IPR011016 GO:0008270(InterPro)
Cre11g1124 264 SMART ringv_2 91 144 IPR011016 GO:0008270(InterPro)
Cre11g1124 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 153 IPR013083 -
Cre11g1124 264 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g1124 Cre-Chr11:8838846 Cre11g2080 Cre-Chr11:32580622 8.60E-09 dispersed
Cre04g0306 Cre-Chr4:8610197 Cre11g1124 Cre-Chr11:8838846 5.30E-09 transposed
Cre10g2275 Cre-Chr10:37048316 Cre11g1124 Cre-Chr11:8838846 1.30E-44 wgd
Cre11g1124 Cre-Chr11:8838846 Cre03g0418 Cre-Chr3:2662191 7.50E-29 wgd
Cre11g1124 Cre-Chr11:8838846 Cre04g0837 Cre-Chr4:27091820 3.60E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1124 - - - 0.0