Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1150 ATGGCGGATAGATGTTGGGGTGGAATTGGGAATCTTGCACACACAGAACAAGAACATGGTACTAAGAATGAAGATGAGGATGGAATTAAAACCAAGAGACGGCCACGAGGGAGACCACCAGGCTCAAAAAACAAGCCAAAGCCACCCATTGTTATCACTAAACATACTCCCAATGCCTTTCAAACCCACGTTTTCGAAATCACCACCGCCACCGACATTGCCCACTCCATTTCCACTTTCGCCCACCGCCGCCACCGTGGGGTTTCCATTCTCAGCGCCACCGGCCTCGTCGCTGACGTCACTCTCCGACAACCCCCCGGCGTCATTACCCTCCACGAACGCTTCGAGATTTTATCTCTCTCTGGCGCTTTCCTCCCCACACCCTCCCCCCACGGGGCTACCGCCTTGACCGTCTATCTCGCCGGCGGCCAAGGCCGGGTCGTTGGAGGCCTCGTCGCCGGTCCCCTCATCGCCGCTGGCCCCGTCATTGTAGTTGCAGCTTCATTTACCAACGCTATGTATGAAAAATTACCGATTGAAGAAGATGAAGAGAATGCAGAGGAGAAGAAATTAGAAGAAGAAAATATTAATGGAAATAATTCAGTGGGAGAATCATCATCAGTAGCAGCAGCAGCAGCAGCAGCAGCAACAACTTCTTTGCCAGTTTATAATTTGATTCCTAATACTCAAATTTCACAAGAAATGTTTTGGGCTCCTCTTCCTCTTCCTCCTCCATCTTATTAA 744 50.27 MADRCWGGIGNLAHTEQEHGTKNEDEDGIKTKRRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFEITTATDIAHSISTFAHRRHRGVSILSATGLVADVTLRQPPGVITLHERFEILSLSGAFLPTPSPHGATALTVYLAGGQGRVVGGLVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENAEEKKLEEENINGNNSVGESSSVAAAAAAAATTSLPVYNLIPNTQISQEMFWAPLPLPPPSY 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9130236 9130979 + CrPI670011_11g011500.1 Cre11g1150 512895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1150 247 MobiDBLite consensus disorder prediction 1 53 - -
Cre11g1150 247 Coils Coil 179 199 - -
Cre11g1150 247 CDD DUF296 61 169 IPR005175 -
Cre11g1150 247 ProSiteProfiles PPC domain profile profile. 57 192 IPR005175 -
Cre11g1150 247 Gene3D - 61 190 - -
Cre11g1150 247 PIRSF ESCAROLA 9 239 IPR014476 GO:0003680(InterPro)
Cre11g1150 247 Pfam Plants and Prokaryotes Conserved (PCC) domain 61 170 IPR005175 -
Cre11g1150 247 SUPERFAMILY AF0104/ALDC/Ptd012-like 57 183 - -
Cre11g1150 247 MobiDBLite consensus disorder prediction 181 202 - -
Cre11g1150 247 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 239 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre11g1150 247 MobiDBLite consensus disorder prediction 17 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g0428 Cre-Chr10:3159720 Cre11g1150 Cre-Chr11:9130236 1.20E-47 dispersed
Cre11g1150 Cre-Chr11:9130236 Cre11g1874 Cre-Chr11:30408104 4.00E-32 dispersed
Cre11g1150 Cre-Chr11:9130236 Cre07g0703 Cre-Chr7:4944381 1.80E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1150 - - - 0.0