Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1155 ATGGCCCTCTTCTTCCTCCGCTTACTCCAACTTCTCATCTACTCTCTCTCTTTGAATCAGAGTCTCTGCTTTTCTGCAACTCAGACCATGGTTTTGCCTCTCAAAACACAGACTGGTTTGATTTCTCAGCCTTCCAACAAGCTCAGTTTCCACCATAATGTCACTTTGACTGTTTCTTTAACTGTTGGCTCACCTCCTCAACAAGTCACCATGGTTCTCGATACAGGGAGTGAACTCTCATGGCTTCACTGCAAAAAATCCCCAAATTTGACCTCTGTTTTTAACCCACTTTCCTCCTCTTCTTACTCACCAATCCCCTGTTCTTCCCCCATTTGCCGGACCCGAACCCGAGATTTACCCAACCCGGTTACCTGCGACCCGAAAAAGCTCTGCCACGCCATTGTCTCTTACGCCGATGCATCGTCGCTGGAGGGCAACCTCGCATCGGATACGTACCGAATCGGGTCATCGGCTCAACCCGGAACTTTATTCGGGTGTATGGATTCGGGTTTCAGTTCGAATTCGGAGGAAGACGCCAAGACTACTGGATTGATGGGGATGAACAGAGGATCGCTCTCGTTTGTGATCCAATTGGGTTTGCCGAAATTCTCTTATTGCATATCGGGTCGTGATTCTTCTGGGGTTCTTCTTTTCGGCGATGCGCCTCTTTCATGGCTTGGGAATTTAACCTACACGCCTTTAGTTCAAATGTCAACCCCATTGCCGTATTACGACCGAGTTGCGTACACCGTCCAACTCGACGGAATCAGAGTAGGGGACAAAATTCTACCACTCCCGAAATCAATCTTCGCACCGGACCACACCGGCGCCGGGCAAACCATGGTGGATTCAGGAACCCAGTTCACGTTTCTTCTCGGACCAGTGTACACAGCTTTAAAGAACGAGTTTCTGTTGCAAACGAAAGGGGTTTTAGTCCCACTGGGTGATCCAAACTTCGTGTTTCAAGGAGCGATGGATTTATGCTACAGAGTACCAGCGAAAGAGGGAAAACTACCGCCGTTGCCGGCGGTGAGTCTGATGTTCCGTGGGGCGGAGATGTTGGTTGGAGGGGAGGTGCTGTTGTACAGAGTACCGGGAATGATGGAAGGAAAGGAGTGGGTTTATTGCTTGACGTTTGGGAATTCGGATTTGTTAGGAATAGAAGCGTTTGTGATAGGGCATCATCATCAACAAAACGTGTGGATGGAATTTGATTTGGTGAAATCAAGGGTGGGATTTGTAGAGACGAGGTGTGATTTGGCAGCCTGCCTTACTAGGAAGCGAAACGAAAGACGGGTCAGACAGCAACTCAACGCGTCCGAGTCACCTCCCTCACTCGACTCGCTTCCTCATCTTCTCCGTCGCCACACCACAGCCGGATTCACATTACTTCAAAATCAACTAGCTGTTGCAACTATTGCAGACATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGACGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTCGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAGGGGCTAAGGCTTCAACTTGCTCTGCTAGATCGAGAATTCGATGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATCAATGCTCTTCCCGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTAAATCAGCAGGCTTCATCTTCAGAATCTAACGAGAAGAGACAAGATTCAGTTAATGCAGTTGGGGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACATGCCCTGTTTGTAAATTCCGAGCGGTGTCTGGGTGGTCAGAGCAGGGGCTAGGAGAAACCGATGCTTATATGGTTTAA 2253 47.71 MALFFLRLLQLLIYSLSLNQSLCFSATQTMVLPLKTQTGLISQPSNKLSFHHNVTLTVSLTVGSPPQQVTMVLDTGSELSWLHCKKSPNLTSVFNPLSSSSYSPIPCSSPICRTRTRDLPNPVTCDPKKLCHAIVSYADASSLEGNLASDTYRIGSSAQPGTLFGCMDSGFSSNSEEDAKTTGLMGMNRGSLSFVIQLGLPKFSYCISGRDSSGVLLFGDAPLSWLGNLTYTPLVQMSTPLPYYDRVAYTVQLDGIRVGDKILPLPKSIFAPDHTGAGQTMVDSGTQFTFLLGPVYTALKNEFLLQTKGVLVPLGDPNFVFQGAMDLCYRVPAKEGKLPPLPAVSLMFRGAEMLVGGEVLLYRVPGMMEGKEWVYCLTFGNSDLLGIEAFVIGHHHQQNVWMEFDLVKSRVGFVETRCDLAACLTRKRNERRVRQQLNASESPPSLDSLPHLLRRHTTAGFTLLQNQLAVATIADMSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGLGETDAYMV 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9197410 9205972 + CrPI670011_11g011550.1 Cre11g1155 512900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1155 750 MobiDBLite consensus disorder prediction 651 680 - -
Cre11g1155 750 CDD RING-H2_PA-TM-RING 688 730 - -
Cre11g1155 750 PANTHER TARGET OF ERK KINASE MPK-1 477 733 - GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cre11g1155 750 FunFam Aspartic proteinase PCS1 224 422 - -
Cre11g1155 750 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 734 IPR013083 -
Cre11g1155 750 Gene3D Acid Proteases 49 219 IPR021109 -
Cre11g1155 750 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 71 82 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cre11g1155 750 Gene3D Acid Proteases 225 424 IPR021109 -
Cre11g1155 750 Pfam Xylanase inhibitor C-terminal 248 414 IPR032799 -
Cre11g1155 750 ProSiteProfiles Zinc finger RING-type profile. 689 730 IPR001841 -
Cre11g1155 750 SMART ring_2 689 729 IPR001841 -
Cre11g1155 750 FunFam Aspartic proteinase PCS1 47 220 - -
Cre11g1155 750 ProSiteProfiles Peptidase family A1 domain profile. 56 414 IPR033121 -
Cre11g1155 750 Pfam Ring finger domain 688 730 IPR001841 -
Cre11g1155 750 SUPERFAMILY Acid proteases 57 419 IPR021109 -
Cre11g1155 750 SUPERFAMILY RING/U-box 683 737 - -
Cre11g1155 750 CDD pepsin_A_like_plant 55 418 IPR034161 -
Cre11g1155 750 MobiDBLite consensus disorder prediction 646 680 - -
Cre11g1155 750 Pfam Xylanase inhibitor N-terminal 57 220 IPR032861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1155 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1239 Cre-Chr5:12331127 Cre11g1155 Cre-Chr11:9197410 1.50E-58 dispersed
Cre10g1934 Cre-Chr10:33995185 Cre11g1155 Cre-Chr11:9197410 4.60E-08 dispersed
Cre07g0613 Cre-Chr7:3940663 Cre11g1155 Cre-Chr11:9197410 2.00E-10 transposed
Cre10g2233 Cre-Chr10:36764767 Cre11g1155 Cre-Chr11:9197410 9.10E-160 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g323 Blo04g00117 . . . . . Bma03g00286 . Cmo04g00206 Cmo04g01246 Cma04g01175 Cma04g00205 Car04g01080 . Sed11g2216 Cpe13g01105 Cpe01g00173 Bhi04g02385 Tan11g0202 Cmetu03g1641 . Hepe02g3365 . Lcy10g2247 Cla07g00320 Cam07g0340 Cec07g0382 Cco07g0343 Clacu07g0333 Cmu07g0386 Cre07g0697 . . Cone11ag1141 . Lsi03g00366 Csa06g00127 Chy10g00531 Cme10g00909 . Blo04g00269 . . Bpe04g01831 . . Bma08g01006 . Cmo04g03071 Cmo15g00107 Cma04g02946 Cma15g00100 Car04g02836 Car15g00108 Cpe01g01084 Cpe01g02555 . . . . . . . Cla11g00648 Cam11g0705 Cec11g0702 Cco11g0691 Clacu11g0827 Cmu11g0682 Cre11g1155 Lsi04g00895 Csa05g00723 Chy03g00135 Cme03g00168
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g0424 . 77 566 C3H Transcription Factor Family AT2G31510 76.0 9.4e-227 783.1
Cre11g1362 . 5 286 C3H Transcription Factor Family AT2G31510 78.7 5.5e-126 448.4
Cre08g0424 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.5e-169 591.7
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31770 59.7 1.4e-77 287.7
Cre08g0424 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.7e-167 584.3
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31760 58.4 3.2e-76 283.1
Cre04g1144 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 2.1e-47 186.0
Cre04g1144 . 8 169 C3H Transcription Factor Family AT5G06490 54.6 2.1e-47 186.0
Cre11g0982 . 1 226 C3H Transcription Factor Family AT3G02290 62.8 5.5e-76 281.2
Cre06g1931 . 43 347 C3H Transcription Factor Family AT1G11020 75.3 4.3e-135 478.0
Cre07g1824 . 62 221 C3H Transcription Factor Family AT1G50440 75.6 4.3e-68 255.0
Cre04g0306 . 2 362 C3H Transcription Factor Family AT5G08750 61.2 3.9e-121 431.8
Cre10g1081 . 1 534 C3H Transcription Factor Family AT3G16090 61.9 1.1e-169 593.6
Cre11g0982 . 1 225 C3H Transcription Factor Family AT5G38895 58.0 4.8e-73 271.9
Cre08g1481 . 16 227 C3H Transcription Factor Family AT1G19310 66.8 1.4e-79 293.1
Cre04g1247 . 40 249 C3H Transcription Factor Family AT1G19310 59.4 8.3e-69 257.3
Cre04g1526 . 9 323 C3H Transcription Factor Family AT2G22120 83.6 3.7e-159 558.1
Cre08g1007 . 70 177 C3H Transcription Factor Family AT5G07040 67.6 3.4e-40 161.8
Cre06g2366 . 30 415 C3H Transcription Factor Family AT1G18470 75.6 4.2e-175 611.3
Cre09g1932 . 121 352 C3H Transcription Factor Family AT1G68200 50.6 2.4e-50 196.4
Cre08g0424 . 60 522 C3H Transcription Factor Family AT2G31770 59.7 4.5e-169 591.7
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31770 59.7 1.4e-77 287.7
Cre08g0424 . 60 529 C3H Transcription Factor Family AT2G31760 58.3 6.7e-167 584.3
Cre11g1362 . 13 245 C3H Transcription Factor Family AT2G31760 58.4 3.2e-76 283.1
Cre07g0431 . 1118 1465 C3H Transcription Factor Family AT2G30580 50.9 2.8e-81 299.3
Cre01g0328 . 46 278 C3H Transcription Factor Family AT5G55970 68.2 3.6e-94 342.0
Cre04g0306 . 2 362 C3H Transcription Factor Family AT5G63780 57.5 6.6e-116 414.5
Cre10g1877 . 1 426 C3H Transcription Factor Family AT3G58030 52.8 2.8e-105 379.4
Cre01g0328 . 35 347 C3H Transcription Factor Family AT4G26580 61.5 5.8e-111 397.9
Cre04g0718 . 69 533 C3H Transcription Factor Family AT5G01960 68.5 1.6e-166 582.8
Cre07g0915 . 1 484 C3H Transcription Factor Family AT5G01960 57.7 4.8e-150 528.1
Cre02g1390 . 1 155 C3H Transcription Factor Family AT2G04240 59.3 1.5e-43 172.9
Cre02g0637 . 1 149 C3H Transcription Factor Family AT2G04240 58.4 5.4e-38 154.5
Cre02g2593 . 1 242 C3H Transcription Factor Family AT5G19430 52.4 3.8e-62 235.3
Cre07g1478 . 130 577 C3H Transcription Factor Family AT5G45290 52.7 5.6e-103 372.1
Cre02g2593 . 40 242 C3H Transcription Factor Family AT5G12310 55.8 2.2e-57 219.5
Cre06g2263 . 131 425 C3H Transcription Factor Family AT5G05810 52.5 4.1e-74 275.8
Cre11g1124 . 53 204 C3H Transcription Factor Family AT5G05830 59.2 2.6e-45 179.1
Cre10g2275 . 70 213 C3H Transcription Factor Family AT5G05830 57.6 4.1e-43 171.8
Cre04g0837 . 451 581 C3H Transcription Factor Family AT5G05830 61.1 9.6e-40 160.6
Cre06g1709 . 30 426 C3H Transcription Factor Family AT4G28890 50.5 2.3e-96 349.7
Cre11g0982 . 1 226 C3H Transcription Factor Family AT5G15790 59.9 5.2e-74 274.6
Cre11g1155 . 476 747 C3H Transcription Factor Family AT3G55530 80.2 2.1e-114 409.1
Cre09g0639 . 27 299 C3H Transcription Factor Family AT1G63900 75.5 1.0e-116 416.8
Cre05g0362 . 26 408 C3H Transcription Factor Family AT2G44580 53.5 6.7e-119 424.5
Cre08g1481 . 25 150 C3H Transcription Factor Family AT1G74990 59.8 9.9e-41 163.3
Cre05g1763 . 3 314 C3H Transcription Factor Family AT5G20910 63.8 5.4e-111 397.9
Cre10g1081 . 119 534 C3H Transcription Factor Family AT1G65040 56.0 2.0e-113 406.0
Cre04g1247 . 41 251 C3H Transcription Factor Family AT2G23780 61.6 3.3e-73 271.9
Cre08g1481 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 7.6e-70 260.8
Cre10g1754 . 1 317 C3H Transcription Factor Family AT3G10810 54.2 5.8e-83 305.4
Cre09g2271 . 1 170 C3H Transcription Factor Family AT1G63840 56.1 2.1e-45 179.1
Cre09g1874 . 18 353 C3H Transcription Factor Family AT1G68070 63.7 3.3e-117 418.7
Cre11g2285 . 4 182 C3H Transcription Factor Family AT1G76410 55.2 2.9e-51 198.7
Cre10g0275 . 1 159 C3H Transcription Factor Family AT1G76410 56.3 5.3e-45 177.9
Cre08g1229 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 2.9e-112 402.5
Cre10g0275 . 1 150 C3H Transcription Factor Family AT2G17450 57.5 5.6e-39 157.9
Cre08g0424 . 77 566 C3H Transcription Factor Family AT2G31510 76.0 9.4e-227 783.1
Cre11g1362 . 5 286 C3H Transcription Factor Family AT2G31510 78.7 5.5e-126 448.4
Cre04g1144 . 7 168 C3H Transcription Factor Family AT2G35910 63.4 4.3e-54 208.4
Cre10g1934 . 15 161 C3H Transcription Factor Family AT2G35910 51.0 5.4e-41 164.9
Cre04g0159 . 1 302 C3H Transcription Factor Family AT2G41980 78.8 3.9e-146 514.6
Cre05g1081 . 659 916 C3H Transcription Factor Family AT2G41980 80.6 1.6e-128 456.1
Cre02g2680 . 106 402 C3H Transcription Factor Family AT2G41980 71.8 4.0e-127 451.4
Cre09g1760 . 48 305 C3H Transcription Factor Family AT2G41980 79.1 1.3e-125 446.4
Cre06g0897 . 43 301 C3H Transcription Factor Family AT2G41980 75.3 2.7e-123 438.7
Cre05g2840 . 158 408 C3H Transcription Factor Family AT2G41980 79.3 6.7e-122 434.1
Cre05g0667 . 119 393 C3H Transcription Factor Family AT3G06140 63.1 2.8e-95 345.9
Cre10g2149 . 33 329 C3H Transcription Factor Family AT3G09770 59.0 1.1e-85 313.9
Cre06g2561 . 58 352 C3H Transcription Factor Family AT3G47990 72.1 4.0e-127 451.4
Cre01g1271 . 348 639 C3H Transcription Factor Family AT3G47990 70.2 9.5e-121 430.3
Cre11g2285 . 4 185 C3H Transcription Factor Family AT1G20823 56.0 4.7e-52 201.4
Cre10g0275 . 1 159 C3H Transcription Factor Family AT1G20823 58.0 1.3e-46 183.3
Cre01g0677 . 38 406 C3H Transcription Factor Family AT3G18930 54.4 3.3e-84 309.3
Cre10g0309 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 7.6e-75 277.3
Cre10g2184 . 3 273 C3H Transcription Factor Family AT5G02750 53.0 2.6e-67 252.7
Cre06g2366 . 34 467 C3H Transcription Factor Family AT1G73950 68.0 2.8e-166 582.0
Cre08g0157 . 1 160 C3H Transcription Factor Family AT1G33480 50.6 7.9e-39 157.9
Cre09g1874 . 15 251 C3H Transcription Factor Family AT2G01735 60.4 3.3e-74 275.4
Cre10g0593 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 4.6e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001758 3 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 3 2 2 2 3 2 2 2 2 2 4 2 2 69