Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre11g1155 | ATGGCCCTCTTCTTCCTCCGCTTACTCCAACTTCTCATCTACTCTCTCTCTTTGAATCAGAGTCTCTGCTTTTCTGCAACTCAGACCATGGTTTTGCCTCTCAAAACACAGACTGGTTTGATTTCTCAGCCTTCCAACAAGCTCAGTTTCCACCATAATGTCACTTTGACTGTTTCTTTAACTGTTGGCTCACCTCCTCAACAAGTCACCATGGTTCTCGATACAGGGAGTGAACTCTCATGGCTTCACTGCAAAAAATCCCCAAATTTGACCTCTGTTTTTAACCCACTTTCCTCCTCTTCTTACTCACCAATCCCCTGTTCTTCCCCCATTTGCCGGACCCGAACCCGAGATTTACCCAACCCGGTTACCTGCGACCCGAAAAAGCTCTGCCACGCCATTGTCTCTTACGCCGATGCATCGTCGCTGGAGGGCAACCTCGCATCGGATACGTACCGAATCGGGTCATCGGCTCAACCCGGAACTTTATTCGGGTGTATGGATTCGGGTTTCAGTTCGAATTCGGAGGAAGACGCCAAGACTACTGGATTGATGGGGATGAACAGAGGATCGCTCTCGTTTGTGATCCAATTGGGTTTGCCGAAATTCTCTTATTGCATATCGGGTCGTGATTCTTCTGGGGTTCTTCTTTTCGGCGATGCGCCTCTTTCATGGCTTGGGAATTTAACCTACACGCCTTTAGTTCAAATGTCAACCCCATTGCCGTATTACGACCGAGTTGCGTACACCGTCCAACTCGACGGAATCAGAGTAGGGGACAAAATTCTACCACTCCCGAAATCAATCTTCGCACCGGACCACACCGGCGCCGGGCAAACCATGGTGGATTCAGGAACCCAGTTCACGTTTCTTCTCGGACCAGTGTACACAGCTTTAAAGAACGAGTTTCTGTTGCAAACGAAAGGGGTTTTAGTCCCACTGGGTGATCCAAACTTCGTGTTTCAAGGAGCGATGGATTTATGCTACAGAGTACCAGCGAAAGAGGGAAAACTACCGCCGTTGCCGGCGGTGAGTCTGATGTTCCGTGGGGCGGAGATGTTGGTTGGAGGGGAGGTGCTGTTGTACAGAGTACCGGGAATGATGGAAGGAAAGGAGTGGGTTTATTGCTTGACGTTTGGGAATTCGGATTTGTTAGGAATAGAAGCGTTTGTGATAGGGCATCATCATCAACAAAACGTGTGGATGGAATTTGATTTGGTGAAATCAAGGGTGGGATTTGTAGAGACGAGGTGTGATTTGGCAGCCTGCCTTACTAGGAAGCGAAACGAAAGACGGGTCAGACAGCAACTCAACGCGTCCGAGTCACCTCCCTCACTCGACTCGCTTCCTCATCTTCTCCGTCGCCACACCACAGCCGGATTCACATTACTTCAAAATCAACTAGCTGTTGCAACTATTGCAGACATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGACGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTCGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAGGGGCTAAGGCTTCAACTTGCTCTGCTAGATCGAGAATTCGATGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATCAATGCTCTTCCCGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTAAATCAGCAGGCTTCATCTTCAGAATCTAACGAGAAGAGACAAGATTCAGTTAATGCAGTTGGGGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACATGCCCTGTTTGTAAATTCCGAGCGGTGTCTGGGTGGTCAGAGCAGGGGCTAGGAGAAACCGATGCTTATATGGTTTAA | 2253 | 47.71 | MALFFLRLLQLLIYSLSLNQSLCFSATQTMVLPLKTQTGLISQPSNKLSFHHNVTLTVSLTVGSPPQQVTMVLDTGSELSWLHCKKSPNLTSVFNPLSSSSYSPIPCSSPICRTRTRDLPNPVTCDPKKLCHAIVSYADASSLEGNLASDTYRIGSSAQPGTLFGCMDSGFSSNSEEDAKTTGLMGMNRGSLSFVIQLGLPKFSYCISGRDSSGVLLFGDAPLSWLGNLTYTPLVQMSTPLPYYDRVAYTVQLDGIRVGDKILPLPKSIFAPDHTGAGQTMVDSGTQFTFLLGPVYTALKNEFLLQTKGVLVPLGDPNFVFQGAMDLCYRVPAKEGKLPPLPAVSLMFRGAEMLVGGEVLLYRVPGMMEGKEWVYCLTFGNSDLLGIEAFVIGHHHQQNVWMEFDLVKSRVGFVETRCDLAACLTRKRNERRVRQQLNASESPPSLDSLPHLLRRHTTAGFTLLQNQLAVATIADMSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGLGETDAYMV | 750 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 9197410 | 9205972 | + | CrPI670011_11g011550.1 | Cre11g1155 | 512900 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre11g1155 | 750 | MobiDBLite | consensus disorder prediction | 651 | 680 | - | - | |
| Cre11g1155 | 750 | CDD | RING-H2_PA-TM-RING | 688 | 730 | - | - | |
| Cre11g1155 | 750 | PANTHER | TARGET OF ERK KINASE MPK-1 | 477 | 733 | - | GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
| Cre11g1155 | 750 | FunFam | Aspartic proteinase PCS1 | 224 | 422 | - | - | |
| Cre11g1155 | 750 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 623 | 734 | IPR013083 | - | |
| Cre11g1155 | 750 | Gene3D | Acid Proteases | 49 | 219 | IPR021109 | - | |
| Cre11g1155 | 750 | ProSitePatterns | Eukaryotic and viral aspartyl proteases active site. | 71 | 82 | IPR001969 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Cre11g1155 | 750 | Gene3D | Acid Proteases | 225 | 424 | IPR021109 | - | |
| Cre11g1155 | 750 | Pfam | Xylanase inhibitor C-terminal | 248 | 414 | IPR032799 | - | |
| Cre11g1155 | 750 | ProSiteProfiles | Zinc finger RING-type profile. | 689 | 730 | IPR001841 | - | |
| Cre11g1155 | 750 | SMART | ring_2 | 689 | 729 | IPR001841 | - | |
| Cre11g1155 | 750 | FunFam | Aspartic proteinase PCS1 | 47 | 220 | - | - | |
| Cre11g1155 | 750 | ProSiteProfiles | Peptidase family A1 domain profile. | 56 | 414 | IPR033121 | - | |
| Cre11g1155 | 750 | Pfam | Ring finger domain | 688 | 730 | IPR001841 | - | |
| Cre11g1155 | 750 | SUPERFAMILY | Acid proteases | 57 | 419 | IPR021109 | - | |
| Cre11g1155 | 750 | SUPERFAMILY | RING/U-box | 683 | 737 | - | - | |
| Cre11g1155 | 750 | CDD | pepsin_A_like_plant | 55 | 418 | IPR034161 | - | |
| Cre11g1155 | 750 | MobiDBLite | consensus disorder prediction | 646 | 680 | - | - | |
| Cre11g1155 | 750 | Pfam | Xylanase inhibitor N-terminal | 57 | 220 | IPR032861 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre05g1239 | Cre-Chr5:12331127 | Cre11g1155 | Cre-Chr11:9197410 | 1.50E-58 | dispersed | |
| Cre10g1934 | Cre-Chr10:33995185 | Cre11g1155 | Cre-Chr11:9197410 | 4.60E-08 | dispersed | |
| Cre07g0613 | Cre-Chr7:3940663 | Cre11g1155 | Cre-Chr11:9197410 | 2.00E-10 | transposed | |
| Cre10g2233 | Cre-Chr10:36764767 | Cre11g1155 | Cre-Chr11:9197410 | 9.10E-160 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre11g1155 | - | - | - | 0.0 |