Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1192 ATGGAATTTGGAGATGTTTGGAGACGAAGAAGAATTGGTTGGTTTTTGGTGTTAATAATTTCAATGGGGATTTTTGTGAGAAAAGGAGATGGGCAGCTGGTGGAAAATTTTTATAAATCCACTTGTCCAAACGTGGAACAAATAGTGAGACAGGCCGTTCAAAACAAGCTCTCCCAAACTACCATTACCATTCCCGCTACTCTCCGTCTCTTCTTCCATGATTGTTTCGTTGAGGGATGCGATGCTTCGGTCATGATTTCATCGCCAAGTGGAGACGCCGAGAAGGACGCACAAGATAACCTTTCCCTTGCCGGAGATGGCTTTGACACCGTCGTCAAGGCAAAACAGGCCGCAGGAGGCCCAAATTTCAACGTCGAATTAGGACGTCGTGACGGCCTGATCTCCAAAGCCTCAAGCGTCGACGGAAATTTACCATCCCCAAATTTCGACCTCAACGCACTGACTTCCATGTTCGCCAGACATGGCCTCTCCCAAACCGACATGATCGCCCTCTCCGGCGCCCACACAATTGGCGCCTCCCACTGCAACCGCTTTTTCGATCGACTCTTCTCTGCTTTCGGTGTAGATCTGTCGCTAAATCCTGCCTACGCAGAGCAGTTGAAACAAGCGTGCCCTCGAAATGTGGATCCAAGTGTGGTGGTGAAGCTGGATCCGACCACTCCAGACACTTTTGACAACGTGTATTACCGAAATCTAATGAACGGAAAAGGACTGTTTAGATCAGATGAGGTTCTGTTCACGAGCTCAGCGTCGAAGGGGACGGTGGTGGGATTTGCGAACAGCGGAGGGCAGTTCAATACGGCGTTTGTGGAGGCGATGAGGAAGCTTGGGAGAGTGGGAGTTAAGACGGGGAGAGCTGGAGAGATAAGGAGAGACTGTAGTGCCTTCAATTGA 915 49.84 MEFGDVWRRRRIGWFLVLIISMGIFVRKGDGQLVENFYKSTCPNVEQIVRQAVQNKLSQTTITIPATLRLFFHDCFVEGCDASVMISSPSGDAEKDAQDNLSLAGDGFDTVVKAKQAAGGPNFNVELGRRDGLISKASSVDGNLPSPNFDLNALTSMFARHGLSQTDMIALSGAHTIGASHCNRFFDRLFSAFGVDLSLNPAYAEQLKQACPRNVDPSVVVKLDPTTPDTFDNVYYRNLMNGKGLFRSDEVLFTSSASKGTVVGFANSGGQFNTAFVEAMRKLGRVGVKTGRAGEIRRDCSAFN 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9735754 9739564 + CrPI670011_11g011920.1 Cre11g1192 512937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1192 304 SUPERFAMILY Heme-dependent peroxidases 32 304 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1192 304 Pfam Peroxidase 114 268 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1192 304 ProSitePatterns Peroxidases proximal heme-ligand signature. 167 177 IPR019793 -
Cre11g1192 304 ProSiteProfiles Plant heme peroxidase family profile. 32 304 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1192 304 CDD secretory_peroxidase 32 303 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre11g1192 304 Gene3D - 33 117 - -
Cre11g1192 304 PRINTS Plant peroxidase signature 222 237 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1192 304 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1192 304 PRINTS Plant peroxidase signature 278 291 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1192 304 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1192 304 PRINTS Plant peroxidase signature 238 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1192 304 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1192 304 PANTHER - 117 304 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1192 304 Gene3D - 118 304 - -
Cre11g1192 304 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1192 304 PRINTS Haem peroxidase superfamily signature 224 239 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1192 304 PRINTS Haem peroxidase superfamily signature 167 182 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1192 304 PRINTS Haem peroxidase superfamily signature 119 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre11g1192 304 Gene3D Peroxidase, domain 2 145 283 - -
Cre11g1192 304 FunFam Peroxidase 145 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre11g1192 Cre-Chr11:9735754 Cre06g1308 Cre-Chr6:7030558 1.20E-51 dispersed
Cre11g1191 Cre-Chr11:9722489 Cre11g1192 Cre-Chr11:9735754 3.90E-97 tandem
Cre11g1192 Cre-Chr11:9735754 Cre11g1193 Cre-Chr11:9770968 1.30E-106 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1192 K00430 - csv:101213343 513.457