Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1250 ATGGAAGCTCTAAACAGTTGGAGGGAGACTCGGTTGTTTTATCTAGTTCATTTTACTCTTATGATTGGTCAACAGAGTATGAGCTCTTCATCAACTCAACTCTGTGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGCAAATGCATTCGGTAGTCGACTAGATACGAGCATATCACCTATTATAAAAGTGGATGACTGTGTAGACATTAAACCCGAGTTTGTTCCTTTTGAATCAATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAATCGATGATAAGGTACAAAGACGTTTAGCACAAAATCGGGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAGCTGCGACTGTTGGAGCAGGAGCTAGAAAGAACTAAGCAACAGAAGGGTACCAGCTGCTTAGTAGATACCAGCCACTTCGGATTCAGCGGATTTGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGATCACCGAACTCAGAAAGGCGTTGCAAGTTCATACAACTGATATAGAACTCCAAATTTTAGTGGAGAGCAGCTTAAACCATTACCACAATCTGTTTTGCATGAAAGCCAATGCTGCGAAGGCTGATGTTTTCTACTTAATGTCTGGTGTTTGGAGAACATCGGCAGAGCGTTTTTTCCACTGGATAGGAGGATTTCGCCCATCAGAGCTGCTAAACGTTCTGAAGCCATACTTTGAGCCATTAAATGAACAACAAAGAGCCGATATCCACAAGTTGCAACAGTCGTCTCGGCAAGCTGAAGATGCGCTCACACAGGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCAGCGATCCTATAGGAAGCTATATTTCTCAGATGGGTGATGGAATGGAGAAACTAGAAGCACTGGAGAGCTTCGTAAGCCAGCCGAGTGTGTGTTACTCTTTTCTTGAACAGGCAGACCATCTCAGGCAACAAACTTTGAAGAGAATGTCTCACATCCTAACCACCAAACAGGCAGCACAAGGCTTGCTCGCTTTGGGCGAGTACTTCCACCGTCTCCGCATCCTCAGTTCGCTCTGGGCTACTCGACCTCGTGAACCTGCCTAG 1179 45.12 MEALNSWRETRLFYLVHFTLMIGQQSMSSSSTQLCASRMGIYEPFHQINSWANAFGSRLDTSISPIIKVDDCVDIKPEFVPFESMDHLESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLRLLEQELERTKQQKGTSCLVDTSHFGFSGFVNPGIAAFEMEYNHWVEEQQRQITELRKALQVHTTDIELQILVESSLNHYHNLFCMKANAAKADVFYLMSGVWRTSAERFFHWIGGFRPSELLNVLKPYFEPLNEQQRADIHKLQQSSRQAEDALTQGMEKLHQNLSLSIASDPIGSYISQMGDGMEKLEALESFVSQPSVCYSFLEQADHLRQQTLKRMSHILTTKQAAQGLLALGEYFHRLRILSSLWATRPREPA 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10870287 10875020 + CrPI670011_11g012500.1 Cre11g1250 512995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1250 392 PANTHER TRANSCRIPTION FACTOR TGA9 27 391 - -
Cre11g1250 392 Coils Coil 127 147 - -
Cre11g1250 392 ProSiteProfiles DOG1 domain profile. 169 387 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cre11g1250 392 Pfam Seed dormancy control 186 261 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cre11g1250 392 SMART brlzneu 97 150 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1250 392 FunFam BZIP family transcription factor 100 150 - -
Cre11g1250 392 Pfam bZIP transcription factor 100 131 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1250 392 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 104 119 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1250 392 Coils Coil 268 288 - -
Cre11g1250 392 Coils Coil 180 200 - -
Cre11g1250 392 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 99 143 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre11g1250 392 Gene3D - 100 152 - -
Cre11g1250 392 SUPERFAMILY Leucine zipper domain 101 142 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1303 Cre-Chr7:27361399 Cre11g1250 Cre-Chr11:10870287 3.00E-92 dispersed
Cre10g1850 Cre-Chr10:33070315 Cre11g1250 Cre-Chr11:10870287 1.30E-64 dispersed
Cre11g1250 Cre-Chr11:10870287 Cre02g2521 Cre-Chr2:38496260 1.40E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54684 PF14144 DOG1 1.60E-28 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1250 K14431 - csv:101217648 687.952