Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g1250 | ATGGAAGCTCTAAACAGTTGGAGGGAGACTCGGTTGTTTTATCTAGTTCATTTTACTCTTATGATTGGTCAACAGAGTATGAGCTCTTCATCAACTCAACTCTGTGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGCAAATGCATTCGGTAGTCGACTAGATACGAGCATATCACCTATTATAAAAGTGGATGACTGTGTAGACATTAAACCCGAGTTTGTTCCTTTTGAATCAATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAATCGATGATAAGGTACAAAGACGTTTAGCACAAAATCGGGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAGCTGCGACTGTTGGAGCAGGAGCTAGAAAGAACTAAGCAACAGAAGGGTACCAGCTGCTTAGTAGATACCAGCCACTTCGGATTCAGCGGATTTGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGATCACCGAACTCAGAAAGGCGTTGCAAGTTCATACAACTGATATAGAACTCCAAATTTTAGTGGAGAGCAGCTTAAACCATTACCACAATCTGTTTTGCATGAAAGCCAATGCTGCGAAGGCTGATGTTTTCTACTTAATGTCTGGTGTTTGGAGAACATCGGCAGAGCGTTTTTTCCACTGGATAGGAGGATTTCGCCCATCAGAGCTGCTAAACGTTCTGAAGCCATACTTTGAGCCATTAAATGAACAACAAAGAGCCGATATCCACAAGTTGCAACAGTCGTCTCGGCAAGCTGAAGATGCGCTCACACAGGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCAGCGATCCTATAGGAAGCTATATTTCTCAGATGGGTGATGGAATGGAGAAACTAGAAGCACTGGAGAGCTTCGTAAGCCAGCCGAGTGTGTGTTACTCTTTTCTTGAACAGGCAGACCATCTCAGGCAACAAACTTTGAAGAGAATGTCTCACATCCTAACCACCAAACAGGCAGCACAAGGCTTGCTCGCTTTGGGCGAGTACTTCCACCGTCTCCGCATCCTCAGTTCGCTCTGGGCTACTCGACCTCGTGAACCTGCCTAG | 1179 | 45.12 | MEALNSWRETRLFYLVHFTLMIGQQSMSSSSTQLCASRMGIYEPFHQINSWANAFGSRLDTSISPIIKVDDCVDIKPEFVPFESMDHLESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLRLLEQELERTKQQKGTSCLVDTSHFGFSGFVNPGIAAFEMEYNHWVEEQQRQITELRKALQVHTTDIELQILVESSLNHYHNLFCMKANAAKADVFYLMSGVWRTSAERFFHWIGGFRPSELLNVLKPYFEPLNEQQRADIHKLQQSSRQAEDALTQGMEKLHQNLSLSIASDPIGSYISQMGDGMEKLEALESFVSQPSVCYSFLEQADHLRQQTLKRMSHILTTKQAAQGLLALGEYFHRLRILSSLWATRPREPA | 392 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10870287 | 10875020 | + | CrPI670011_11g012500.1 | Cre11g1250 | 512995 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g1250 | 392 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 27 | 391 | - | - | |
Cre11g1250 | 392 | Coils | Coil | 127 | 147 | - | - | |
Cre11g1250 | 392 | ProSiteProfiles | DOG1 domain profile. | 169 | 387 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cre11g1250 | 392 | Pfam | Seed dormancy control | 186 | 261 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cre11g1250 | 392 | SMART | brlzneu | 97 | 150 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1250 | 392 | FunFam | BZIP family transcription factor | 100 | 150 | - | - | |
Cre11g1250 | 392 | Pfam | bZIP transcription factor | 100 | 131 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1250 | 392 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 104 | 119 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1250 | 392 | Coils | Coil | 268 | 288 | - | - | |
Cre11g1250 | 392 | Coils | Coil | 180 | 200 | - | - | |
Cre11g1250 | 392 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 99 | 143 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre11g1250 | 392 | Gene3D | - | 100 | 152 | - | - | |
Cre11g1250 | 392 | SUPERFAMILY | Leucine zipper domain | 101 | 142 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre07g1303 | Cre-Chr7:27361399 | Cre11g1250 | Cre-Chr11:10870287 | 3.00E-92 | dispersed | |
Cre10g1850 | Cre-Chr10:33070315 | Cre11g1250 | Cre-Chr11:10870287 | 1.30E-64 | dispersed | |
Cre11g1250 | Cre-Chr11:10870287 | Cre02g2521 | Cre-Chr2:38496260 | 1.40E-71 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54684 | PF14144 | DOG1 | 1.60E-28 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g1250 | K14431 | - | csv:101217648 | 687.952 |