Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g1275 ATGGAGGTTGCAACAATGGCGACAACAATGACGGCGAAAGGTGGATGGGAGAGGCTAAAGATTCATCTTCGTTCGAGCGTTCCTTCATTCCTTCACCATGGATCTTTGTTCAAGAGTTTGAGCTCCGACATGGATCTCTATTCCAACTTTTTTATGGATCTTCATTCCAACTACGTCGATCATCGAGCTCTACTAGCCTTCTTCAACAACTTCGTCAAGTGTTTGTCTCTAGTTCCAGAATTGAGCTCCATCAAGCGTTGCAATTATTCCAGCTCCGTTCTAGTTCTATCAACCTTCGTGTTCACGTTGTTCGAGCCAACTCCGATTTCAGATCTAAGCATTGTCGAAGCAAATCTTCGTTTATGTTCACGTTTTTCATTTCGTATTAGATATGTTCACGGATCTATTCACGAACTTCGTTCCAGCACTGTCGAAACAGATCTAAGAACTCTGTTCCAATGCTCGCGAACTATCCCATCTCCAAGAGTCCTAGAAAGGCTAGACCTCGACGAAAGCTTGCACTTCTTCCGCCGTCGAAAAGTAAGTTGTTGTTTGCTTCTGCCAGAATCGTATCATCGGAGACGGAGGCGGCGACTGTCCTCTCTCGCTGCCGGTTTTATCACTGTCCACCTTGCGACAGCTACCGCGACTGAAGGATTAAGGAACAATATGTTCAAGAAGGCGGCAGAAGCGAAGTTACACCAGAGATTATCTGGTGCAGACAGGAAGAAGCTGAAGAGGACTGTTAAAGAAAGGTTCCCCGGAGCTTCCGATGCCGATATTGATGTCTTGCTTCCTCCCAAGGTTGAGTTTTCTGTTGCCAAGTTCCAAAATCGCGTCCACATATATAGTCTAGAAGGAGGCTTTCCTATGTTTTTCGACGTTGATGGGAGAGGAACTGAAATATTCCCCACAGTTTTTGCACTCTGGATGGTACCAGAGTTGTTGCCTGCCTTTGTTTTGAAGGGGGGTGAAGTCTCTCGCTATGTGATAGGAGGAGCAGACTTGATGTTCCCTGGTATTCACATTCCTGCTGAAGGTCTTCCTTCATTTTTATCTGGGGAACCATGGGCTGTGAAAGTCCCTGGTAATGCATCTCCTATTGCTGTTGGTGTTACCACCATGAGTAGCACTGAAGCATTAAAAGCAGGTTTACGTGGAAAGGCTCTGAGAATTCTACACTACTACAGGGATTCCCTTTGGGGATCGGTAGAGGGTCATTATGTGCCGAATGCAGGTTTCTTGGAAGATGTTGTATATGGAGATCCTGTTTTGGCATCATCTTCACAAACCGATGACTCTTGTGAAGGTACTGAAACTGCTGCTGATGCTTCAAATTATGGACAGAATGACAGCAGCAATAAAGAAGTTGGGGGATCTGTTGATGAAACTACAAGTGATGTTCTTGATGAGCCTGGGGTTGTTCTAACAGCACAGACAGATTCAACTACTGATGATATCGTTTCTAGTGTGAATGATTTGAAGGTTGTAAATGATATTTCCACTGAGGAACCAAATGTGCCACATACTCTATCAGCTGATGATGTGGATAAGCTTCTGGATAAATGTCTTCTTCAAGCCCTGCATACAACCGTGAAAGACAAAGACTTTCCACTTCCTGGAAGCACTCTATGGTCAAATCATGTATTGCCTTGTCGGCCTCCTGGCATGATGCTAGACATCAAGAAATCATCTTACAAGAAATTGTCAAAGTGGTTGCAAGCTAAATCCTCTACTGGACTGATTATAGTGAAAGAAGACAAGCATAAAAAAGAGACGGTTTTGTACTCTGTTAACCGTAAGCATCCAGACTACACTTCCTTTAAACCAGAGAAGCAACAGGTAGAGAAAATTGATCAGAGCGACAATCATGGTCCAAAAGAAAGTTTATCCAATAAAATGCTTGAAGTAGCAGAGATATACAAGCCAAGTGTGCATGTCAATCCCATTTTTTTTGCTGTGGGGGCGGACACTAGCAAACTTTACACTGCAGCAGAGGCTACTGATATTGTCTTCCAATACATTGAGAAAGAAAAATTGGAGAAACCAACAGAAAAGTCCAGAGTGGTCTTGGACGCAATATTGTGTGATGCACTGTTCAAGGGGGCCATTAAGAAAGGAACAACATATCCAACAGAAATTCATAAAAAAGATATAGGTTCAACATTTATCAGCCGGATGCAACCTCATCATATTGTAACAAGAGGAAGTGAGTCTGTTGTTCGCAAAGGTGCATTAAAGACTATTCAAATAATGACAGAGCGACGTCAAGGAAATAAGAAAGTTACAAGACTTTCTGGGTTGGAAACGTTCTTGTTGGATGCTGAAGCATTGGCATCAGAGCTTCAGAAAAAGTGTGCTTGCAGTACGACGGTGGCTGAGTTGCCAGGTAAAAAAGGTACATTGAAGTACTTGATAAAACAAGGAAATGAGAGGCTAGAGCTGCTATATATTCACAGGAAACTTACCAACCCCCGCCTGTATCATGCAAAAAAGGAAAAGCCTGAATCAAAAGATATGGTAGAAGTTACTGATGATGAGTTTCAGCCACTGCCTCCTGCCACTGTTATCGTCGTTTCGTTTGCCTTCAACAATGAAATCGATACAGCCATTGCCGCTGTCATGAAGACACCTATTTGA 2640 43.18 MEVATMATTMTAKGGWERLKIHLRSSVPSFLHHGSLFKSLSSDMDLYSNFFMDLHSNYVDHRALLAFFNNFVKCLSLVPELSSIKRCNYSSSVLVLSTFVFTLFEPTPISDLSIVEANLRLCSRFSFRIRYVHGSIHELRSSTVETDLRTLFQCSRTIPSPRVLERLDLDESLHFFRRRKVSCCLLLPESYHRRRRRRLSSLAAGFITVHLATATATEGLRNNMFKKAAEAKLHQRLSGADRKKLKRTVKERFPGASDADIDVLLPPKVEFSVAKFQNRVHIYSLEGGFPMFFDVDGRGTEIFPTVFALWMVPELLPAFVLKGGEVSRYVIGGADLMFPGIHIPAEGLPSFLSGEPWAVKVPGNASPIAVGVTTMSSTEALKAGLRGKALRILHYYRDSLWGSVEGHYVPNAGFLEDVVYGDPVLASSSQTDDSCEGTETAADASNYGQNDSSNKEVGGSVDETTSDVLDEPGVVLTAQTDSTTDDIVSSVNDLKVVNDISTEEPNVPHTLSADDVDKLLDKCLLQALHTTVKDKDFPLPGSTLWSNHVLPCRPPGMMLDIKKSSYKKLSKWLQAKSSTGLIIVKEDKHKKETVLYSVNRKHPDYTSFKPEKQQVEKIDQSDNHGPKESLSNKMLEVAEIYKPSVHVNPIFFAVGADTSKLYTAAEATDIVFQYIEKEKLEKPTEKSRVVLDAILCDALFKGAIKKGTTYPTEIHKKDIGSTFISRMQPHHIVTRGSESVVRKGALKTIQIMTERRQGNKKVTRLSGLETFLLDAEALASELQKKCACSTTVAELPGKKGTLKYLIKQGNERLELLYIHRKLTNPRLYHAKKEKPESKDMVEVTDDEFQPLPPATVIVVSFAFNNEIDTAIAAVMKTPI 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11389003 11407303 - CrPI670011_11g012750.1 Cre11g1275 513020

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g1275 879 SUPERFAMILY SWIB/MDM2 domain 632 731 IPR036885 -
Cre11g1275 879 CDD eIF2D_N 232 304 IPR048247 -
Cre11g1275 879 ProSiteProfiles PUA domain profile. 316 397 - -
Cre11g1275 879 Pfam Translation initiation factor SUI1 747 812 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre11g1275 879 Pfam Pre-PUA-like domain 225 313 IPR041366 -
Cre11g1275 879 Gene3D - 745 820 - -
Cre11g1275 879 MobiDBLite consensus disorder prediction 426 461 - -
Cre11g1275 879 Gene3D - 222 408 - -
Cre11g1275 879 FunFam eukaryotic translation initiation factor 2D 746 821 - -
Cre11g1275 879 SUPERFAMILY eIF1-like 714 801 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre11g1275 879 MobiDBLite consensus disorder prediction 605 629 - -
Cre11g1275 879 FunFam Eukaryotic translation initiation factor 2D isoform A 224 408 - -
Cre11g1275 879 CDD eIF2D_C 749 810 IPR039759 -
Cre11g1275 879 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2D 224 812 IPR039757 GO:0001731(PANTHER)|GO:0001731(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)
Cre11g1275 879 ProSiteProfiles Translation initiation factor SUI1 family profile. 749 823 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cre11g1275 879 MobiDBLite consensus disorder prediction 605 626 - -
Cre11g1275 879 SUPERFAMILY PUA domain-like 326 402 IPR015947 -
Cre11g1275 879 CDD PUA_eIF2d-like 315 397 IPR048248 -
Cre11g1275 879 MobiDBLite consensus disorder prediction 426 472 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g1275 K15027 - - csv:101219792 1065.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1583 Cre-Chr6:11156635 Cre11g1275 Cre-Chr11:11389003 2.40E-43 dispersed
Cre09g1446 Cre-Chr9:27514735 Cre11g1275 Cre-Chr11:11389003 4.30E-42 dispersed
Cre10g1114 Cre-Chr10:22999908 Cre11g1275 Cre-Chr11:11389003 2.40E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1717 . Blo12g00811 . . . . . . . . . . . . . . . Bhi04g02549 Tan11g0045 . . Hepe02g3467 . Lcy10g2359 . . . . . . . Cone4ag1153 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00797 Cam11g0833 Cec11g0819 Cco11g0821 Clacu11g1027 Cmu11g0888 Cre11g1275 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008392 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34